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Hi Arkadiy, thanks very much for developing this great tool :)
I'm trying to implement FeGenie, however, near the end of the analysis this error is raised:
`Pre-processing of final outout fil…
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Hi,
When I run the program providing a reference database it throws an error which I cannot figure out how to solve. Any help is appreciated!
Cheers,
Christoph
/Final processing of outpu…
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Hi Arkadiy,
I am trying to use FeGenie to identify proteins involved in iron reduction.
My inputs are two amino acid fasta files from two metatranscritptome data. they are significant genes est…
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Hi Arkadiy,
I am trying to run FeGenie with various bam file aligning to 2 different genomes. The command I am using is:
FeGenie.py -bin_dir final_megahit_co_assemblies/ -bin_ext fa -out fegenie…
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Hi there,
I've run into a new problem with running FeGenie. Previously I've run the script with no issue however now I receive the following error everytime I try to run
`Consolidating summary …
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Hi,
Thanks for the tool. Since I found that the annotations obtained from FeGenie installed by conda were few. I test the FeGenie installed by conda and the FeGenie installed manually. The results …
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After running FeGenie with a reference database (nr.dmnd) I get the error shown below.
As an output I get the complete FeGenie-summary.csv and an empty file FeGenie-summary-altered.csv.
I think I…
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I Found that LithoGenie can predict more cyc2 gene than FeGenie. Why? Which one I can believe? Moreover, I found the results of FeGenie were very unstable. I can predict a cyc2_cluster3 from a genome …
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Hello, congratulations for your work.
I had an error while executing the last command on "Easy Installation (if you don't have Conda)" insctructions:
`./FeGenie.py -h`
, which throws to me:
…
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Hi there,
I am aiming to make plots with coverage data for several bam files. I get .depth files and .csv files (as well as ORF_calls and HMM_results. However, there are no plots. Here is my input a…