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Move the implementation of the Hessian vector product approximation of the Fisher matrix into a standalone, runable location (maybe `utils.py`)
https://github.com/pmelchior/scarlet2/blob/9360b42c50ee…
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### Checked for existing issues
- [X] I have checked for existing issues, and have found none.
### Tested latest version
- [X] I have checked that this occurs on the latest version.
### GregTech C…
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When computing the Fisher information with the function [`SinQPE_FI`](https://github.com/StefanoPolla/EarlyFT_QPE/blob/c5da21e9660bfb4e9a549a3ec3b1c1cdab8024ae/eftqpe/SinQPE.py#L77) for small values o…
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Hello, I'm revisiting this comment as I've run into a similar observation in my dataset- the FS field (fisher test for strand bias) does not seem to be correctly populated — it is coming up as zero fo…
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I love this design and would like to see it more full body and with a fem counterpart.
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Hi,
Could you provide more details on how the background gene list is handled? Does this mean the background gene list is adjustable? If I specify a custom background gene list, does the algorithm …
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Hi, if I want to shuffle a vector of length 100 million (say 1 billion times), is this a suitable approach? The reason I thought that fisher Yates was a good choice was because I only have a few True …
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Hi! Thanks a lot for your tool, I find it very useful and easy to use. I noticed that in the [code](https://github.com/theislab/cellrank/blob/82248b266e6f3b8508c96c81b1870a65692ac82e/src/cellrank/_uti…
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1. Are all QC analyses in this section only for CHR X?
2. --assoc doesn't exist in Plink 2 -- should this be GLM? Is there an equivalent fisher flag?
3. --test-missing doesn't exist in Plink 2 -- sh…
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Hello, I have been trying to use the heterotachy.py script (phylofisher v1.2.14):
`heterotachy.py -tr matrix_FULL.fa.treefile -m matrix_FULL.fa -s 2216`
*.treefile is the output tree from iqtree…