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8 elements
i0 for before the sample a
and IT (i t transmission) for after the sample
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As a user I would like to be able to analyse data that comes from the fluorescence detector. In https://github.com/DiamondLightSource/hyperion/issues/1433 we found that we could write out data write o…
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Hi there! I tried fluorescence deconvolution with the example notebook and encountered a few issues:
1) In file `waveorder_reconstructor.py`, `Hz_det_setup` calls `gen_Pupil` function which is miss…
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### Operating system
win10
### Platform
64
### OpenSlide Python version
1.3.1
### OpenSlide version
3.4.1/4.0
### Slide format
czi
### Issue details
I am not able to read the czi file prope…
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To be able to routinely do fluroescence scans we would need to be able to put the data into ispyb such as https://ispyb.diamond.ac.uk/dc/visit/cm37235-2/ty/mca/id/15180.
## Acceptance Criteria
* W…
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**追加機能についての概要**
Currently, selecting an cell ROI in VISUALISE-> Select Roi ->cell_roi will make this appear in VISUALISE -> fluorescence (if ref image is linked). However, Selecting an fluorescence I…
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After capturing fluorescence data we should trigger zocalo to analyse it. To do this zocalo needs a blank recipe and the following parameters:
```python
params = {
"inputFile": "/dls/i24/data…
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**Submitting author:** @sajjad88 (Sajjad Khan)
**Repository:** https://github.com/LidkeLab/matlab-instrument-control
**Branch with paper.md** (empty if default branch):
**Version:** v0.1.0
**Editor:*…
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Currently waveorder can output negative fluorescence intensity. This leads to inconveniences in visualization (auto-contrast will boost background noise) and downstream numeric processing. I can think…
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GDA reads the data out of the xspress3 directly from PVs then writes it to it's own file format. However, the xspress3 IOC has the ability to write HDF files, which we would like to use. The first ste…