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- [ ] Data with fsaverage CIFTI derivatives
- [ ] Add fsaverage to allowed spaces
- [ ] Run on the test data and debug from there
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Use FSSurface with parcelation to create material segmentation of FSAverage scan to white matter, grey matter, CSF, skull, skin, air
FSaverage has brain segmentation, but it seems skin and skull su…
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Smoothing on surface is not implemented yet.
Yet when running a GLM on surface with some smoothing requested no warning is thrown.
```python
from nilearn import datasets
import pandas as pd
from nil…
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Nilearn version: 0.9.2
### Expected behavior
Vertices are supposed to match across fsaverage resolutions. In particular, fsaverage 6 vertices are supposed to be a subset of fsaverage 7 v…
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I don't understand where it is getting /kymata-toolbox/kymata-toolbox-data from! It specifically says: "Data root set at /Users/administration/Github/kymata-core/kymata-core-data". And it is nowhere i…
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Note passing a negative values as threshold is ignored and does not throw warnings:
```python
"""Test plotting asymmetric color bar."""
import matplotlib.pyplot as plt
import numpy as np
fr…
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As far as I can tell, running fMRIPrep v1.5.0 with `--output-spaces fsaverage:den-41k` does not yield the expected GIfTI outputs with 40,962 vertices. It yields files named `sub-*_task-*_space-fsavera…
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https://github.com/nilearn/nilearn/blob/ef33ae97858e290555a6224699e675d9b3de77e7/nilearn/plotting/surf_plotting.py#L1467C1-L1472C6
It would be helpful to pass arguments to vol_to_surf here to chang…
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Hi, while running the code I'm receiving the following error:
```
ERROR:0001_ses_20180410_task_MEGLabRestingEO_run_01:do_make_aparc_sub :: [Errno 13] Permission denied: '/mnt/raid/atonin/bids/Protoc…
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Found while trying to solve #323.
The error arrises with this simple working example:
```
from kymata.datasets.fsaverage import FSAverageDataset
FSAverageDataset().download()
```
caiw updated
2 months ago