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Hi Chi,
This may be a naive question and tried a couple of things. We are trying to subset the microtable after querying the FungalTraits database to a specific lifestyle: "plant_pathogens". But …
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Dear all,
I am evaluating possibilities for genotyping hundreds of fungal genomes and came across the Maast paper. Would you see any particular problem in applying Maast to fungal or eukaryotic gen…
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Hello!
I used UNITE to assign taxonomy.
When looking at the assignments some received:
- OTU_6 k__Fungi NA NA NA NA NA NA
- OTU_4 k__Fungi p__Fungi_phy_Incertae_sedis c__Fungi_cls_Incertae_sedi…
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I created two different databases, one with Bacteria+Virus and another with Bacteria+Fungi+Virus, and ran them, resulting in slightly different outcomes. Would it be more accurate to create and run se…
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### Description of feature
Dear developers,
I do have two questions:
1. I want to pass several databases to BTK's nextflow pipeline (v0.6.0) should I pass them several times using --busco li…
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http://www.bbc.com/future/story/20190314-the-unexpected-magic-of-mushrooms
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I’m looking for gene prediction alternatives to MetaEuk that are less resource intensive for my VEBA software suite (https://github.com/jolespin/veba). With a cursory glance at the repo, it looks lik…
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I am trying to use the prebuilt Fungal database for the fungal diversity study.
I ran the following command.
kraken2-build --download-library fungi --db fungi
After completion of the data proc…
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Please update the `download_summary.py` script so that if the `current_folder` and `previous_folder` columns are identical is produces an error message in the `error_flag` column.
For example, in …
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Hi there,
while trying to perform an analysis using FUNGuild, I received the following message "Error in if (tax1[j, i] %in% use_database[, "taxon"]) { :
argument is of length zero.
Do you have an…