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viralemergence
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virion
The Global Virome in One Network
https://viralemergence.github.io/virion
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some links are broken on the downloads page
#82
colebrookson
opened
1 month ago
0
Revert "missing `paste0()`"
#81
colebrookson
closed
7 months ago
0
Revert "docker image working" - not yet working exactly how i want
#80
colebrookson
closed
7 months ago
0
Add image
#79
colebrookson
closed
9 months ago
3
docker image working
#78
colebrookson
closed
9 months ago
0
Turn each group of things into functions that can live alone by themselves
#77
colebrookson
opened
9 months ago
0
making sure this dep transfers
#76
colebrookson
closed
9 months ago
0
add some docs to the scripts
#75
colebrookson
opened
9 months ago
2
write the tests to run on virion on the same container after compiled
#74
colebrookson
opened
10 months ago
0
Get the image on docker hub
#73
colebrookson
closed
9 months ago
1
build local docker image to run all of virion code on
#72
colebrookson
closed
9 months ago
3
possible fix of gh-actions
#71
colebrookson
closed
10 months ago
2
Usage of Virus genome/protein in VIRION
#69
JY-97
opened
2 years ago
0
Retrieve genome sequence
#68
JY-97
closed
2 years ago
0
Recursion problem with GLOBI
#67
cjcarlson
opened
2 years ago
20
Possible error in PREDICT taxonomy: FLAVI-
#66
cjcarlson
closed
2 years ago
1
Add files via upload
#65
renatamuy
closed
2 years ago
0
increased lab size, res and removed boldface
#64
renatamuy
closed
2 years ago
0
increased label size and res
#63
renatamuy
closed
2 years ago
0
Collapse rows by NCBIAccession if everything else is identical?
#62
cjcarlson
closed
2 years ago
2
Duplicated PREDICT viruses because of underscore
#61
cjcarlson
opened
2 years ago
2
PMID, DOI
#60
renatamuy
opened
2 years ago
1
Paramyxovirus classified as fungi?
#59
cjcarlson
opened
2 years ago
0
PREDICT-Valid column or something to match ICTVRatified
#58
cjcarlson
closed
2 years ago
0
add a reference text
#57
renatamuy
closed
3 years ago
4
HostOriginal
#56
renatamuy
closed
3 years ago
1
Install R for the first job
#55
tpoisot
closed
3 years ago
0
betacov-VIRION integration
#54
cjcarlson
opened
3 years ago
0
Host synonyms as accessible metadata
#53
cjcarlson
opened
3 years ago
1
Remove VIRION-SRA and update Readme
#52
cjcarlson
closed
2 years ago
3
Gimme the grapes boys and free my soul
#51
cjcarlson
closed
3 years ago
1
Retain SRA Accessions
#50
cjcarlson
closed
3 years ago
0
Change the order so ICTVRatified is grouped right
#49
cjcarlson
closed
3 years ago
1
HostFlagID is inconsistent
#48
cjcarlson
closed
2 years ago
3
Torque teno virus (TTV) is not a valid name
#47
cjcarlson
opened
3 years ago
3
NA or empty string to mark missing data?
#46
tpoisot
closed
3 years ago
3
using theme_graph()
#45
renatamuy
closed
3 years ago
0
Two invalid PMIDs are contained in PMID column
#44
lbrierley
opened
3 years ago
3
VirusOriginal field is missing for a small number of GenBank recods
#43
lbrierley
closed
2 years ago
3
HostSynonyms column is empty
#42
lbrierley
closed
3 years ago
3
Migrate clovert_dev to viralemergence/clover
#41
cjcarlson
closed
3 years ago
1
Marmosets!
#40
cjcarlson
opened
3 years ago
0
Some species have conflicting higher taxonomies
#39
maxfarrell
closed
3 years ago
7
One instance of HostFamily is in single quotes
#38
maxfarrell
opened
3 years ago
3
HostClass 'actinopterygii' versus 'actinopteri'
#37
maxfarrell
closed
3 years ago
2
Coronavirus, but make it birds
#36
cjcarlson
opened
3 years ago
1
Issues with some is.na(Host) rows
#35
rorygibb
closed
3 years ago
3
PublicationYear and PMID fields are all NA
#34
rorygibb
closed
3 years ago
2
Minor pre-alpha tidying
#33
eveskew
closed
3 years ago
1
VirusFlagContaminant field has no TRUE values
#32
eveskew
closed
3 years ago
1
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