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viralemergence
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virion
The Global Virome in One Network
https://viralemergence.github.io/virion
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VirusFlagContaminant field has no TRUE values
#32
eveskew
closed
3 years ago
1
VirusClass field sometimes contains erroneous host information
#31
eveskew
closed
3 years ago
1
NCBI higher taxonomy has inconsistent host class designations
#30
eveskew
closed
3 years ago
1
Virus TaxID's for the SRA dataset
#29
cjcarlson
closed
3 years ago
0
Document the SRA generation code
#28
cjcarlson
closed
3 years ago
2
Automated download of fresh GenBank?
#27
cjcarlson
closed
2 years ago
3
Implement the automatic updating with Github actions
#26
cjcarlson
closed
2 years ago
2
Update the Ultron/Jarvis figure
#25
cjcarlson
closed
3 years ago
1
Some preliminary phylogenetic descriptors for the paper
#24
cjcarlson
closed
3 years ago
1
Show Greg how to do the Github actions
#23
cjcarlson
closed
3 years ago
1
GenBank taxonomy needs to adopt updating-based system
#22
cjcarlson
closed
2 years ago
1
Working case-insensitive NCBITaxonomy.jl build needed
#21
cjcarlson
opened
3 years ago
3
Update README.md
#20
renatamuy
closed
3 years ago
1
would vdict() and hdict() be faster if you passed names directly to classification()?
#19
cjcarlson
closed
3 years ago
1
the current file structure loses all the non-species (host/virus) names
#18
cjcarlson
closed
3 years ago
2
Duplicates, maybe because of synonyms call?, in virus.jl
#17
cjcarlson
closed
3 years ago
1
cf. names merge as the actual names in findSyns3
#16
cjcarlson
closed
3 years ago
0
Use a function to make the actual script more readable
#15
tpoisot
closed
3 years ago
0
API changes in NCBITaxonomy
#14
tpoisot
closed
3 years ago
1
Phage go deletus
#13
cjcarlson
closed
3 years ago
0
Match PREDICT accessions to GenBank accessions as a viral taxonomy check
#12
cjcarlson
closed
3 years ago
0
Virus and host taxonomy - sp.
#11
cjcarlson
closed
3 years ago
0
[WIP] Taxonomy cleanup
#10
tpoisot
closed
3 years ago
2
NCBItaxonomy.jl
#9
cjcarlson
closed
3 years ago
1
Host taxonomy - remove subspecies and make unique column
#8
cjcarlson
closed
3 years ago
1
clean up code slightly, naming issue, removed here depend
#7
taddallas
closed
3 years ago
0
Thank ComputeCanada in README.md
#6
cjcarlson
closed
3 years ago
0
**CLOVER dev** 🍀
#5
cjcarlson
closed
3 years ago
0
The big development priorities
#4
cjcarlson
closed
3 years ago
0
Remove phage using Ryan's script
#3
cjcarlson
closed
3 years ago
0
NCBITaxonomy.jl the hosts and viruses in SRA
#2
cjcarlson
closed
3 years ago
0
NCBITaxonomy.jl the raw hosts
#1
cjcarlson
closed
3 years ago
0
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