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Hi, nice work on the package!
Later on in my analysis, I need to get the composition of each pseudoreplicate.
I want to do a heatmap of the differentially expressed genes (DEGs) between 2 conditions…
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Hi, when I run the STARmap example, the following problem occurs
baysor preview -x 'x' -y 'y' -g 'gene' -c configs/starmap.toml -o output_dapi molecules.csv
[19:16:50] Info: (2023-09-13) Run Bayso…
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- [ ] ATAC
- Work in progress: https://github.com/openpipelines-bio/openpipeline/issues/398
- [ ] CCC analysis
- Robrecht lift over from Open Problems?
- [ ] DE analysis
- [ ] Gene signatures…
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Two different installation methods are introduced for installing the release (via `BiocManager::install`) and the development version (via `remotes::install_github`) of the package.
Note that `Bioc…
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**Source** = glygen_upload.csv
**Output** = *_proteoform_glycosylation_sites_embl.csv
**Mapping Files:**
unreviewed/human_protein_masterlist.csv and unreviewed/mouse_protein_masterlist.csv
misc/…
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Hello,
I have been trying to run this function for my data. I have faced with this error:
**" Getting unique markers Error in BisqueRNA::MarkerBasedDecomposition(bulk.eset = bulk, markers = mark…
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I am not sure I understand the preprint right. It seems that sleuth-ALR introduce a new normalization method by treating counts as composition data.
If so, I was wondering that if I have two dataset…
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Please provide as much information as you can:
* **Suggested term label:**
I want to annotate the process of duc1
In this study, we identified the previously uncharacterized S. pombe protein…
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Add functions to internally compute correlations between OTU/ASV counts (transformed) and gene expression (transformed). After importing expression profiles and ASV/OTU counts, admins must be able to …
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Hi,
I'm wondering how to get the gene names belonging to the differents modules. Basically, how to get the composiotion of the gene modules.
Thank you.
ERIGR updated
2 years ago