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Hi,
I want to making a signature matrix using isolated cells, where the isolated cells have been sequenced using the bulk approach instead of the single-cell approach.
I am going to use sample 1-…
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BACKGROUND
Many ways to potentially improve on this would suggest Issue Assignee do some "field research" and/or "user webinar research" to find the best solution before starting this ticket (or befo…
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Hello,
I am new to programming and I'm having difficulty understanding the heatmap output data. It is my understanding that ImpulseDE2 outputs heatmaps illustrating gene expression trajectories in …
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**Lab Name**: Bioinformatics and Data Science in Biotechnology Lab
**Department**: Biotechnology and Biomedical Engineering
**List of Experiments and Repositories**:
1: Writing and…
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If one runs the Jacobian calculation with sub-sampling enabled such as follows: `dyn.vf.jacobian(adata, regulators=top_pca_genes, effectors=top_pca_genes, sampling="velocity", sample_ncells=2000)`, su…
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### Synthetic circuits integrating logic and memory in living cells
Piro Siuti, John Yazbek & Timothy K Lu (2013)
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**Global summary:**
- Strategy for building synthetic logic circu…
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## Background
RNA expression data associates genomic features that gives a perspective into the genetic activity within a cell medium. Experiments often relate sample and expression data to discover …
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Dear Marc Jan Bonder,
I am following your paper published in Genome Biology (2021) to perform cell-type specific sc-eQTL mapping. In the paper, you mentioned a model including two random effects (k…
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Now this function I have no idea of how to do. It's probably hard.
But it should translate a function (on the form of a weight vector that is used in an ANN) to regular mathematics. Like plus and min…
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Hello!
First words: impressive work! I really like Cerebro :slightly_smiling_face:
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Also, I like some features of [Loupe Cell Browser](https://support.10xgenomics.com/single-cell-gene-expr…