-
I have already run Pyrodigal on ~50k genomes and would like to run GECCO on these genomes without rerunning Pyrodigal in the backend. Is there similar usage to `antiSMASH` where precompute gene model…
-
Hello developers!
Thank you for such an great tool!
I wonder if there is an option or way to keep the pyrodigal cds predictions in a gff format or convert the tsv coordinates to gff
Thank you…
-
Not sure if it is a software problem or if my gff format does not meet the requirements of the software. It is recommended that authors provide an example-gff file that can be run.
```
Scanning Sequ…
-
Thankyou for building the new tool to complement Orthofinder.
The features are currently required in NCBI feature format. Is it possible to implement a feature to use a local GFF file instead as an i…
-
I am a PhD student doing a collaborative project between Trinity College Dublin and UCLondon and am using MCScanX. I am just getting to know the tool and have been trying to use the test data availabl…
-
Hi, vg is a great software in pangenome.
I have 12 genome and gff files, and already built a graph-based pangenome with SV vcf file by _vg construct_ and _vg index_.
I also have some RNA-seq dat…
-
There is a bug in the code that is preventing execution of the bedtools intersect command:
[Mon Aug 5 21:10:14 2024] checking formatting of GFFs in ome2gff.txt..
sh: -c: line 0: syntax error near…
drdna updated
1 month ago
-
Hello,
I have trouble in using prophET. I validated my GFF file and i still receive this error "The following line does not have 9 columns separated by , a GFF format requirement.
Check if the col…
-
Hi,
I want to annotate a Verticillium Genome via command line. I installed augustus and all neccesary stuff to get it work and tested with the example data -> worked.
My Verticillium Genome is als…
-
Hi Ian,
Thanks for making this great tool available!
I've been able to get this running in a Singularity container on my machine, but I would like to have output in GenBank format (I can't find an…