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Review annotations GO:0007212 dopamine receptor signalling pathway
to check whether these are all GPCRs
See https://github.com/geneontology/go-ontology/issues/28005
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Hi there,
I'm attempting to use assign_generic_numbers_gpcr.py in the structure folder of your GitHub repository. However, I noticed that the required file at protwis/static/blast/protwis_gpcr_blas…
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Would it be possible to also evaluate class B GPCRs with the model? For example, by selecting only the generic residue pairs that class A and class B share (and masking the others). So far in my tests…
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The following is the list of tasks for this project:
- [x] cAMP receptor activity not a child of G-protein coupled receptor activity geneontology/go-ontology/issues/13881
- [x] MP cell surface …
ukemi updated
5 years ago
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Hello,
Could you add a tutorial of simulating GPCR proteins ? In the second step of preparing proteins, protprep.py can't recognize lipids (in my case POPC lipids prepared in Charmmgui) and therefor…
xy127 updated
9 months ago
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**Note that there are multiple terms to review, so multiple spreadsheets**
**GO:0030817 regulation of cAMP biosynthetic process**
DONE https://docs.google.com/spreadsheets/d/16bL-BHUIoljKbcuCwDdG…
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Recently I tried to use MDTraj to analysis my system which is a ligand combine with a GPCR protein.Here I want to use the CA atom of GPCR protein to do the alignment and calculate the RMSD of the liga…
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Sometimes we might want to apply different curation workflows to different subsets of the dataset, based on the value of label or non-label column (e.g. protein targets class)
Right now you'd need…
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I wonder what the document "gpcr_uniprot2triplets.json' means because I want to add some protein sequence to fine-tune the model,but I don't know how to get the representation like 210 triplest in thi…
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This might be useful for helping benchmark systems relevant to Chaya's work.