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Currently, I downloaded Docker Image from WSL2
As the advice left in Issue 14, the command was executed with
**docker run --name fbl --gpus all -p 8888:8888 -it fruitflybrain/fbl:latest /bin/bash**…
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Unfortunately `hemibrain_reroot` doesn't work with the new hemibrain surface mesh. I'm not sure if it is expanded with respect to the underlying meshes. For FAFB I have used the signed distance to hel…
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The option of getting the hemibrain neurons in JRCFIB2018 space is given as an option, but this doesn't exist where the function is looking for it.
``` r
library(hemibrainr)
#> Loading required pac…
mmc46 updated
3 years ago
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Tracking issue - to post tables
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For hemibrain, only the one with `adult(hemibrain)` works anything else does not seem to work.
This prohibits the use of two hemibrain settings each connecting to a different processor.
yiyin updated
3 years ago
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Regions are JFRC2 L&R. But we don't have painted domains for these on JFRC2 - or visible on JRC2018U
Proposal: Robbie creates these domains **on JRC2018U** - as new individuals. Where these corre…
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`hemibrain_clean_skeleton` calls `prune_synapseless_branches`
https://github.com/flyconnectome/hemibrainr/blob/36f255878d9c8cbf256ad8b1c8f0dd746d384a8c/R/hemibrain_read_neurons.R#L183-L184
but t…
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@mmc46 @alexanderbates we should make a function like `nview3d` that works for hemibrain data (which has that extra pi/2 coordinate flip).
For example this is actually
```
nview3d('frontal', e…
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Hi,
When I try to download a mesh or a skeleton to transform to FAFB like below:
```
neuron_mesh = neu.fetch_mesh_neuron(1324365879, lod=2, with_synapses=False)
flywireneuron_mesh=navis.xform_brai…
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@bdpedigo _et al._ (I'm afraid I don't have the other's Github handles)
Just to quickly follow up on our short discussion just now.
I'm afraid I was a bit scatter-brained and didn't do a good jo…