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When I try to pull the higlass/higlass-docker image, I always meet the error: "error pulling image configuration: download failed after attempts=6: dial tcp 114.43.24.59:443: i/o timeout". Even i chan…
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I created a new higlass-transcripts track from GeneCode_M31 in the following way:
```
cd ../data/ref/GeneCode_M31/higlass
curl https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M3…
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I'm trying to follow HiGlass documentation to locally setup HiGlass on a workstation with a static IP address, then use my desktop to view the data. "higlass-manage ingest" moves the test file sample…
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Description:
A user should be able to upload their own matrix file to our server and injest into higlass, note: these files are very large so we will only cache them for a short time before deleting …
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**User story**
Pass AbortSignals to zarrGet (second parameter) calls that occur often, for example within the higlass zarr datafetcher. Higlass may need to support passing the AbortSignal though.
…
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Hi,
I'm a new user for higlass and the docker. I followed the tutorial https://docs.higlass.io/tutorial.html. I met the following problems in running the sample data. Could you help?
First, $**hig…
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Hi,
I have a problem setting up a new instance of Higlass. I installed higlass-manage in the following way:
```
$ conda create -p condaEnv/py3.6 python=3.6
$ source activate condaEnv/python.3.6
$…
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Hello,
I have a question about an issue using `higlass-manage`. I hope I receive some feedback.
I am trying to ingest a gene annotation .bed file, so I can see the gene labels on higlass visual…
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Copied from Slack:
pete [12:29 PM]
> Check out clodius/tiles/mrmatrix.py
also check out this file: https://github.com/higlass/clodius/blob/pkerpedjiev/tsv-to-mrmatrix/scripts/tsv-to-mrmatrix.py
…
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Hi,
I first installed Docker, and installed Anaconda3 in Win10. I try to install HiGlass in the conda using `pip install higlass-manage`. But I got this error:
Using cached pysam-0.15.4.tar.gz (1…