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Hi there,
It is so great to use HERBS!
I have successfully had a 3D trajectory track of NP1.0 from sagittal slices, great!
 about thesis objectives. I will help you with the code but I need to understand the objectives...
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Hi,
I'm trying to run the Nuclei Segmentation step on a Visium image with shape (9847, 10090), but I receive the following error message:
```python
terminate called after throwing an instance…
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**Describe the user role**
As a user creating a complex pipeline, I would like to have the possibility to create a a block subsystem of services clickable and expandable. Please see the animation sho…
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* Name of dataset: OASBUD (Open Access Series of Breast Ultrasound Data)
* URL of dataset: https://zenodo.org/record/545928#.X0xKf8hKg2z
* License of dataset: Creative Commons 4.0
* Short descripti…
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Hi, I'm using the `StarDist` library for histological image segmentation in WSI format using the pre-trained model `2D_versatile_he.` The model construction and segmentation process are running correc…
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Someone have some idea how to start to develop this or to hace control of opacity in certain tiles.
I want to open an image with a certain opacity in all entire image.
When i am a certain zoom, i …
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Hey guys. I installed HERBS a few days ago via Anaconda and python 3.8.
However, now I am unable to load any histological image, be it .tiff, .png or a .czi file.
It always gives me the following e…
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I went down a rabbit hole and want to pin this idea in case someone wants to take it up later: optimal fuzzy matches between the gsheet and CCV databases (or potentially any other database formats we …
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Hope all is well! I was hoping to try and use VALIS to register my sections from different patients to a standard space so that I could perform downstream topographical analyses. An example of the sta…