MathOnco valis issues - Githubissues

MathOnco / valis

Virtual Alignment of pathoLogy Image Series

https://valis.readthedocs.io/en/latest/

MIT License

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issues

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Don't see stacked images saved as OME-TIFF

#169 WillYe45 closed 2 days ago
5
Apply the registration results to the predicted segmentation mask image for 3D reconstruction

#168 zhahaha123 opened 2 weeks ago
0
Warped GeoJSON Annotation Misalignment and Tilt After Registration

#167 shubhankar-git opened 3 weeks ago
2
Bug when warping and merging?

#166 simomounir opened 1 month ago
1
ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject

#165 zhahaha123 opened 1 month ago
0
Unable to read .qptiff files

#164 Wenke-Liu opened 1 month ago
2
facing issue in non_rigid_registrars.NonRigidRegistrar

#163 shubhankar-git closed 2 weeks ago
0
facing error using NonRigidRegistrarGroupwise

#162 shubhankar-git opened 1 month ago
0
error using SimpleElastixWarper

#161 shubhankar-git opened 1 month ago
0
Issues with points - not transformed correctly?

#160 lukasz-migas opened 2 months ago
5
Zen 3.8+ Incompatibility

#159 Justin-Krieg opened 2 months ago
1
Docker usage generates nonsensical image

#158 Justin-Krieg closed 2 months ago
1
register problem

#157 lingxitong opened 2 months ago
1
Specify Channel Order When Merging

#156 ewestlundicr closed 2 months ago
2
Save only one Tiff

#155 lingxitong closed 2 months ago
4
Extracting transformation matrix and applying on other images.

#154 simomounir opened 2 months ago
3
Processing Images with Low Brightness and Contrast

#153 ignaciojci opened 2 months ago
2
Unable to reproduce results in register_ihc.py example

#152 changwxx opened 2 months ago
5
Saving as .ome.tiff

#151 snackthingy opened 2 months ago
10
Images not appearing in registered slide directory

#150 snackthingy closed 2 months ago
6
Error

#149 snackthingy closed 2 months ago
5
new dockerfile

#148 Gibbsdavidl opened 3 months ago
0
Passing a rigid transformation to the registrar

#147 pauldoucet opened 3 months ago
3
UnboundLocalError: cannot access local variable 'slide_dimensions' where it is not associated with a value

#146 SinaSOX closed 3 months ago
1
Running the code on kaggle

#145 SinaSOX opened 3 months ago
0
What is the best platform(or linux distribution) to run the code?

#144 SinaSOX closed 3 months ago
0
Not producing output

#143 dr-sayyadhury opened 4 months ago
4
very large ome.tiff file size

#142 minajamshidi closed 4 months ago
3
Non-Rigid Registration Error

#141 ewestlundicr opened 4 months ago
11
Non Rigid registration

#140 simomounir opened 4 months ago
1
OSError cannot load library 'libvips.so.42' on the latest Docker image

#139 KOBE24DUNK opened 4 months ago
4
IndexError: list index out of range

#138 KOBE24DUNK closed 4 months ago
5
Only DAPI image when merging, with feedback "Have already added all channels in ['DAPI']"

#137 KOBE24DUNK closed 4 months ago
0
Error with registration when I use a cropped version of the image

#136 msberges opened 4 months ago
2
register 3d images (X,Y,Z) and register from various objectives (x20 /x63) ?

#133 Nal44 opened 5 months ago
9
Register DAPI image and IHC image (rgb) ?

#132 Nal44 closed 4 months ago
5
Unexpected colored pixels after registration

#131 kevin346-sc opened 5 months ago
1
valis requires and outdated version of pydantic through ome-types

#130 iRyoka closed 5 months ago
2
Micron/Pixel for best registration results

#129 lifangda01 opened 6 months ago
0
Where to choose the default GPU

#128 syy-create opened 6 months ago
2
Warping cell and transcript x,y coordinates - unable to shift or warp

#127 dr-sayyadhury opened 6 months ago
1
Transfer annotations from one image to other previously registered.

#126 msberges closed 6 months ago
3
Batch registration and merge of multiplexed images + Whole Slide Processing slicing

#125 andreevg04 opened 6 months ago
3
large tiff output

#124 lingxitong closed 5 months ago
2
Merging channels and not getting the first image I want to get the DAPI from

#123 andreevg04 opened 6 months ago
7
ann transfer

#122 lingxitong closed 5 months ago
18
add new wsi .format?

#121 lingxitong opened 6 months ago
3
How to register at a specific magnification

#120 syy-create opened 7 months ago
0
Problems with tiled non-rigid registration

#118 batukav opened 7 months ago
3
How to read data from non-standard slide libraries

#117 syy-create closed 7 months ago
1