MathOnco valis issues - Githubissues

MathOnco / valis

Virtual Alignment of pathoLogy Image Series

https://valis.readthedocs.io/en/latest/

MIT License

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issues

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facing issue in non_rigid_registrars.NonRigidRegistrar

#163 shubhankar-git opened 5 days ago
0
facing error using NonRigidRegistrarGroupwise

#162 shubhankar-git opened 5 days ago
0
error using SimpleElastixWarper

#161 shubhankar-git opened 5 days ago
0
Issues with points - not transformed correctly?

#160 lukasz-migas opened 1 week ago
0
Zen 3.8+ Incompatibility

#159 Justin-Krieg opened 1 week ago
1
Docker usage generates nonsensical image

#158 Justin-Krieg closed 1 week ago
1
register problem

#157 lingxitong opened 2 weeks ago
0
Specify Channel Order When Merging

#156 ewestlundicr closed 2 weeks ago
2
Save only one Tiff

#155 lingxitong closed 2 weeks ago
4
Extracting transformation matrix and applying on other images.

#154 simomounir opened 3 weeks ago
1
Processing Images with Low Brightness and Contrast

#153 ignaciojci opened 3 weeks ago
1
Unable to reproduce results in register_ihc.py example

#152 changwxx opened 1 month ago
5
Saving as .ome.tiff

#151 snackthingy opened 1 month ago
10
Images not appearing in registered slide directory

#150 snackthingy closed 1 month ago
6
Error

#149 snackthingy closed 1 month ago
5
new dockerfile

#148 Gibbsdavidl opened 1 month ago
0
Passing a rigid transformation to the registrar

#147 pauldoucet opened 1 month ago
3
UnboundLocalError: cannot access local variable 'slide_dimensions' where it is not associated with a value

#146 SinaSOX closed 2 months ago
1
Running the code on kaggle

#145 SinaSOX opened 2 months ago
0
What is the best platform(or linux distribution) to run the code?

#144 SinaSOX closed 2 months ago
0
Not producing output

#143 dr-sayyadhury opened 2 months ago
4
very large ome.tiff file size

#142 minajamshidi closed 2 months ago
3
Non-Rigid Registration Error

#141 ewestlundicr opened 2 months ago
11
Non Rigid registration

#140 simomounir opened 2 months ago
1
OSError cannot load library 'libvips.so.42' on the latest Docker image

#139 KOBE24DUNK opened 2 months ago
4
IndexError: list index out of range

#138 KOBE24DUNK closed 2 months ago
5
Only DAPI image when merging, with feedback "Have already added all channels in ['DAPI']"

#137 KOBE24DUNK closed 2 months ago
0
Error with registration when I use a cropped version of the image

#136 msberges opened 3 months ago
2
register 3d images (X,Y,Z) and register from various objectives (x20 /x63) ?

#133 Nal44 opened 3 months ago
9
Register DAPI image and IHC image (rgb) ?

#132 Nal44 closed 2 months ago
5
Unexpected colored pixels after registration

#131 kevin346-sc opened 3 months ago
1
valis requires and outdated version of pydantic through ome-types

#130 iRyoka closed 3 months ago
2
Micron/Pixel for best registration results

#129 lifangda01 opened 4 months ago
0
Where to choose the default GPU

#128 syy-create opened 4 months ago
2
Warping cell and transcript x,y coordinates - unable to shift or warp

#127 dr-sayyadhury opened 4 months ago
1
Transfer annotations from one image to other previously registered.

#126 msberges closed 4 months ago
3
Batch registration and merge of multiplexed images + Whole Slide Processing slicing

#125 andreevg04 opened 4 months ago
3
large tiff output

#124 lingxitong closed 3 months ago
2
Merging channels and not getting the first image I want to get the DAPI from

#123 andreevg04 opened 5 months ago
7
ann transfer

#122 lingxitong closed 3 months ago
18
add new wsi .format?

#121 lingxitong opened 5 months ago
3
How to register at a specific magnification

#120 syy-create opened 5 months ago
0
Problems with tiled non-rigid registration

#118 batukav opened 5 months ago
3
How to read data from non-standard slide libraries

#117 syy-create closed 5 months ago
1
Will Valis work under Centos 7?

#116 yaoxiaoxu0630 opened 5 months ago
3
adding sched_getaffinity when available to determine number of procs

#115 p-smirnov closed 3 months ago
1
Enhancement: respecting cgroup cpu limits

#114 p-smirnov closed 3 months ago
1
check_flattened_pyramid_tiff question

#113 p-smirnov opened 5 months ago
3
Installation/import problem -- 'xfeatures2d module is not available'

#112 stevenjayfrank opened 5 months ago
7
TypeError:'NoneType' object is not subscriptable

#110 syy-create closed 5 months ago
15