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Add GWAS catalog file to repo. Add notebook that
- matches diseases from GWAS catalog to our diseases (perhaps use fuzzywuzzy for matching, do some manual matching if needed afterward)
- matches …
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Webservice that chooses a reference sequence based on
Input:
1) HLA (or other) consensus sequences. full length or features.
2) IMGT version.
Output:
1) Best matching reference sequence
2) …
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Good morning, I wanted to ask for some guidance regarding an issue I've been running into while genotyping structural variants using graphtyper. I am attempting a test-run of graphtyper v2 on multiple…
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It would be useful for debugging to have the Hla Nomenclature version logged to AI along with the existing messages, e.g., HMD recreation, Data Refresh, search requests, etc.
Implementation suggest…
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Hi
Can you explain how you calculate CDS distance, CDS consensus and CDS mutations?
Thanks
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I am trying to train HIBAG models for loci other than HLA. Training the models in parallel causes the following error:
```
> hlaAllele(true_kir_types_train$sample.id, H1=true_kir_types_train$allele1…
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`Microsoft.Azure.ServiceBus` has been deprecated and `Azure.Messaging` has the advantage of bulk sending.
Azure.Messaging is being used in some isolated cases, but I refrained from doing a complete…
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Better error handling would be nice to have.
```r
> loadImages("IMC_oSCC_Angela2024/", "tiff", single_channel = TRUE, on_disk = TRUE, h5FilesPath = getHDF5DumpDir())
Error in normalizeDoubleBrack…
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_Issue [HLA-782](https://jira.stsci.edu/browse/HLA-782) was created on JIRA by [Michele De La Pena](https://jira.stsci.edu/secure/ViewProfile.jspa?name=mdelapena):_
Issue found by Jenn and document…