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BodenmillerGroup
/
cytomapper
R package for visualization of highly multiplexed imaging data
https://bodenmillergroup.github.io/cytomapper/
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y axis coordinate
#94
arcolombo
closed
2 months ago
5
loadImages Subscript Error
#93
DarioS
opened
3 months ago
6
compImage function
#92
SchulzDan
closed
7 months ago
3
Revert changes and add test
#91
lassedochreden
closed
8 months ago
1
Fix_Bioc_3.19_release
#90
lassedochreden
closed
8 months ago
1
no detected spatial_community
#89
Elena983
closed
9 months ago
1
BPPARAM + on disk handling on images
#88
andrea-de-micheli
opened
10 months ago
3
In measureObjects, replace merge by left_join
#87
nilseling
opened
11 months ago
0
Started draft for bug fix
#86
nilseling
opened
11 months ago
4
Fix corner case bug in cytomapperShiny
#85
nilseling
opened
11 months ago
0
Adapt comp image tests
#84
nilseling
closed
11 months ago
3
Load images fix
#83
nilseling
closed
1 year ago
1
Implementing a ZARR reader in cytomapper
#82
nilseling
opened
1 year ago
0
First working version
#81
nilseling
closed
1 year ago
0
Zarr reader lasse
#80
nilseling
closed
1 year ago
0
Read zarr nils
#79
nilseling
closed
1 year ago
0
Cytomappershiny questions
#78
ssaintsoon
closed
1 year ago
2
Question for scale_bar for images used for publication?
#77
Pancreas-Pratik
closed
1 year ago
2
Modifying `h5FilesPath` for `CytoImageList` object
#76
ynanli
closed
1 year ago
3
Color legend change
#75
Tsuyshi
opened
1 year ago
0
Bug fix: measureObjects internally sets correct channel names
#74
nilseling
closed
1 year ago
1
Memory usage with big data sets
#73
Mark-Ste
closed
1 year ago
3
Option to read in multiple single-channel images to multi-channel
#72
nilseling
closed
1 year ago
1
Shiny fix
#71
nilseling
closed
1 year ago
1
Bug in violin plot
#70
nilseling
closed
1 year ago
1
Setting custom breaks in colour parameter
#69
MureziCapaul
closed
9 months ago
0
Measure objects fix
#68
nilseling
closed
2 years ago
1
Developmental changes
#67
nilseling
opened
2 years ago
0
Add option to remove cells after gating
#66
nilseling
opened
2 years ago
0
Cytomappershiny - Error: Graphics API version mismatch
#65
jparkinson375
closed
2 years ago
9
Strip out CytoImageList
#64
nilseling
closed
9 months ago
0
Measure objects updates
#63
nilseling
closed
2 years ago
1
mcols to colData
#62
ellispatrick
closed
2 years ago
2
CytomapperShiny gating only applies to one ROI of the 6
#61
tessbrodie
closed
2 years ago
6
Reader function for single-channel tiffs
#60
nilseling
closed
1 year ago
3
show clustering groups in cytomapper
#59
sailseem
closed
2 years ago
3
Make image handling more efficient
#58
nilseling
opened
2 years ago
11
Bug fix: keep elementMetadata of CytoImageList
#57
nilseling
closed
2 years ago
0
Keep metadata when compensating images
#56
nilseling
closed
2 years ago
1
Fix pattern argument in loadImages function
#55
nilseling
closed
1 year ago
1
Spillover compensation
#54
nilseling
closed
2 years ago
1
Add function to compensate images
#53
nilseling
closed
2 years ago
1
Missing system libraries on Ubuntu 20.04 for EBImage
#52
jwindhager
closed
3 years ago
5
Option to read in datasets stored in .h5 files
#51
nilseling
closed
3 years ago
0
Warinings and errors when reading tif file exported with qupath
#50
kaizen89
closed
3 years ago
4
Add option to load .h5 files into CytoImageList object
#49
nilseling
closed
3 years ago
1
How to export cell mask from qupath?
#48
kaizen89
closed
3 years ago
6
Allow/document cowplot/patchwork support
#47
nilseling
closed
3 years ago
1
Allow multiple colour list entries even when colouring only one factor
#46
nilseling
closed
3 years ago
1
Bug when setting `legend = NULL`
#45
nilseling
closed
3 years ago
1
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