BodenmillerGroup cytomapper issues

BodenmillerGroup / cytomapper

R package for visualization of highly multiplexed imaging data

https://bodenmillergroup.github.io/cytomapper/

31 stars 9 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Implement cellDist function

#44 nilseling closed 3 years ago
2
Measure objects

#43 nilseling closed 3 years ago
1
Support for on disk representation of images

#42 nilseling closed 3 years ago
0
Merge snapshot tests

#41 nilseling closed 3 years ago
0
Update UI test expectations to accommodate shiny 1.6

#40 cpsievert closed 3 years ago
1
add option to visualize densities in scatter plots in shiny

#39 nilseling opened 3 years ago
0
Implement a measureObjects function

#38 nilseling closed 3 years ago
1
Implement HDF5Array backend

#37 nilseling closed 3 years ago
1
Use shinytest for javascript testing

#36 nilseling closed 3 years ago
1
Switch to snapshot unit testing

#35 nilseling closed 7 months ago
1
Scale function should take multiple scaling factors

#34 nilseling closed 3 years ago
1
introduce sample switch

#33 toobiwankenobi closed 4 years ago
0
shiny: wrong outlines

#32 toobiwankenobi closed 4 years ago
1
separate container for 'Expression' colorbar in shiny

#31 toobiwankenobi closed 7 months ago
0
Additional unit testing and validity checks

#30 toobiwankenobi closed 4 years ago
0
Zoom-in functionality, Contrast setting, and Tab separation

#29 toobiwankenobi closed 4 years ago
0
Make return_plot output conform with ggplot/cowplot

#28 nilseling closed 4 years ago
1
Implement plotPixel function

#27 toobiwankenobi closed 4 years ago
0
legend with many elements is not fully visible

#26 toobiwankenobi closed 4 years ago
1
extend vignette section 8.1 Subsetting the SingleCellExperiment object

#25 toobiwankenobi closed 4 years ago
1
Normalizing individual channels with different inputRanges

#24 JanaFischer closed 4 years ago
2
Change "highly multiplexed imaging cytometry" to "highly multiplexed imaging" everywhere

#23 nilseling closed 4 years ago
1
Figure out why subset_images is slower than subsetting the list directly

#22 nilseling closed 4 years ago
1
Make normalize function more efficient

#21 nilseling closed 4 years ago
1
Test if images that are being returned are numerically the same as EBImage output

#20 nilseling closed 4 years ago
0
Change loadImages functionality to always return an ImageList object

#19 nilseling closed 4 years ago
1
Fix size of legend titles, image titles and scale_bar label

#18 nilseling closed 4 years ago
2
Rewrite plotCells that only masks can be displayed

#17 nilseling closed 4 years ago
0
Fix subset_images parameter

#16 ndamond closed 4 years ago
1
Implement scale and normalize function

#15 nilseling closed 4 years ago
0
Implement graphList and plotGraph function

#14 nilseling closed 9 months ago
1
Fix scale that expression is comparable across images

#13 nilseling closed 4 years ago
1
Move legend to side of images

#12 nilseling closed 4 years ago
1
Things that the user can modify

#11 nilseling closed 4 years ago
3
Potentially switch to ggplot logic

#10 nilseling closed 4 years ago
1
Expand plotCells and plotPixels to take extra arguments in "..."

#9 nilseling closed 4 years ago
1
Write unit tests for all hidden functions

#8 nilseling closed 4 years ago
0
Potentially change to ImagingExperiment class from Caridnal

#7 nilseling closed 4 years ago
1
Rethink the name "SingleCellMapper"

#6 nilseling closed 4 years ago
0
Compare to existing packages

#5 nilseling closed 4 years ago
0
Write proper replacement methods for "[[" and "["

#4 nilseling closed 4 years ago
3
Create mockImage, mockSCE

#3 nilseling closed 4 years ago
0
Reduce size of example files

#2 nilseling closed 4 years ago
0
Implement ImageList class and utils

#1 nilseling closed 4 years ago
2