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Hi Johannes,
When working with the human `EnsDb` version 112 I obtained an unexpected result. Specifically, it seems a substantial number of genes (and transcripts) are not included in the current `E…
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Based on my quick review of the human data page, I request the following updates:
- DisGeNET, PMut, IntoGen, BoostDM, Cancer genome interprete these resources are mentioned in the text but they do…
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Hi,
I'm working on the integration of human and zebrafish scRNAseq data, refering to this benchmarking strategy and code, I got a overintegrated umap in samap analysis, yet a Unintegrated umap in sc…
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I try the "PASTA vignette", and get a error as fowllowing:
######################## code
pbmc dense coercion: allocating vector of size 3.1 GiB
3: In .M2v(x) : sparse->dense coercion: allocati…
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Great work! When trying to run the visualize.py script using the `--preprocess` flag with human demonstration data, I get the following:
> FileNotFoundError: [Errno 2] No such file or directory:` '…
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Traceback (most recent call last):
File "/usr/local/lib/python3.8/dist-packages/pandas/core/indexes/base.py", line 3361, in get_loc
return self._engine.get_loc(casted_key)
File "pandas/_lib…
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Hi,
I am new to this but was able to successfully replicate your google colab notebook.
I wonder how could I incorporate human gene symbol instead of mouse.
`text_file = "./data/Muris_gene_r…
apal6 updated
10 months ago