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I came across ICD-O topography codes in https://github.com/cBioPortal/oncotree/blob/master/scripts/ontology_to_ontology_mapping_tool/ontology_mappings.txt with identifiers like C80.9. These codes appe…
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I'm encountering ICD-11 disease identifiers which are not normalizable currently. Is there any ongoing effort to create these mappings in Babel? I noticed that there is a makefile for MONDO ingest tha…
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Hi Joakim,
Your previous paper, "Automated Medical Coding on MIMIC-III and MIMIC-IV: A Critical Review and Replicability Study" (2023), you used a split that stratified according to ICD codes.
Yo…
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MIMIC ICD Codes are not strictly ICD-9 or ICD-10. There are codes in MIMIC that are obsolete ICD codes across ICD versions.
Current solution
- created FHIR codesystems for MIMIC ICD-9 and ICD-10
…
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``` r
library(purrr)
library(pathologie)
x
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Is there a way to access ICD procedural codes for patients? In the diagnosis table, the ICD9Code provides ICD9 diagnosis codes for the hospitalization but in searching this element, does not appear th…
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@JoakimEdin
I'm working with ICD code extraction and came across your repository. I used the Makefile to download the weights with the command `poetry run gdown --id 1Gna1tEQqtSrBQC_2QX_1HGpZBYAFQCi…
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Hi, I'm hoping you can help me identify why multilingual functionality breaks only when using the FHIR api to get English ICD-10 display strings.
What works:
- I have successfully imported the S…
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We need a way to distinguish different entity types, for example, ICD, ICF, ICHI, Extension Codes, etc. for different purposes (e.g., we need to use different postcoordination axes for different entit…
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Hi, I'm the author of the R package 'icd', and I'm glad to see that several of us have worked on solving the comorbidity computation problem. Just noticed your package today. Also, glad to see you liv…