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Ben has a new assay that can measure expression levels for 100 - 1k transcripts with very low input material and cost. He also has some micro-dissection technology to sample a small piece of tissue fr…
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Hi,
I have a mouse bulk RNA seq data, can I use xcell to do immune cell infiltration analysis?
Best,
Honglin
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Project Title: Melanoma infiltration of stromal and immune cellsProject Short Name: Mouse MelanomaProject UUID: 8c3c290d-dfff-4553-8868-54ce45f4ba7fWrangler/s: Mallory,Ann,Freeberg; Danielle,,Welter; …
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Project Title: Melanoma infiltration of stromal and immune cellsProject UUID: 8c3c290d-dfff-4553-8868-54ce45f4ba7fWrangler/s: Mallory,Ann,Freeberg; Danielle,,Welter; PI/s: N/ASpecies: ['mus musculus']…
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Hello, i have big interests of your Mesomics project, so i just try to do similar analyses with other cancer datasets.
However i keep struggling to do mapping the feature to ternary plot like below. …
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Hello Trust4 Team,
Thank you for developing such a useful tool.
I’ve encountered an issue and don’t know how to deal with it.
I have 8 bulk RNA-seq samples, and their FASTQ files are approximate…
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Project UUID: 8c3c290d-dfff-4553-8868-54ce45f4ba7f
Project Title: Melanoma infiltration of stromal and immune cells
Project Short Name: Mouse Melanoma
Submission UUID: 4756b97c-3666-4ff0-9c48-611d…
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Creating this issue to keep track of random ideas for project name
@maximz :
> something simple like "infiltrate" or "infiltration" could work, or maybe a quasi-synonym like "percolate"
Some…
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The "Mouse Melanoma" dataset is ready for secondary analysis.
**Project title**: Melanoma infiltration of stromal and immune cells
**Project short name**: Mouse Melanoma
**Project UUID**: 8c3c290…
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Hi pipeline creator,
I am new to IMC data analysis so please bear my ignorance. My query related to this- https://bodenmillergroup.github.io/ImcSegmentationPipeline/ilastik.html
While trying to im…