-
### Description of feature
The implementations within parsnp to do this are too slow for large panel datasets, and this would make it easier to have other alignment tools later on still use the same …
-
During my research I have encountered what might be a bug or perhaps a problem in the model description in AliSim. The problem arises when simulating sequences specifying a discretized gamma distribut…
-
I am trying to use TreeShapIQ with an XGBoost model, but I keep encountering a ValueError indicating that the tree model must be either a dictionary or a TreeModel object. Despite passing both a boost…
-
Dear Developers,
I used IQ-TREE to construct gene trees for individual loci, with a total of 8276 loci. However, only 8229 were successfully constructed. I checked one example of the unsuccessful cas…
-
### Context
Currently, IQ-TREE version 2.1.2 is used in the Docker image with a note that it requires emulation on non-amd64 hosts:
https://github.com/nextstrain/docker-base/blob/822a45939508929…
-
Allow IQ-TREE to be built as a library on windows.
-
老师，就是如果我跑ML树的话，就是在ModelFinder中建模型的时候，model for 那里我要选择PhyML对吧？
然后再把ModelFinder_results导入import to IQ-TREE,最后跑出来的树就是ML树对吧？
-
A very useful feature would be for IQ-TREE to automatically generate a full MrBayes command block with lset and prset parameters for all DNA and/or protein partitions specified in the partition file. …
-
Dear David,
I am new to Phylogenomics and have to say that the Orthofinder program along with all the available online resources have been tremendously useful, so thank you for all of that.
I am…
-
Dear Developers,
I am encountering an issue with IQ-TREE 2 and would appreciate your assistance. When I run my analysis using the following command, it works perfectly:
`iqtree2.exe -s seq_outgroup_…