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Hi authors, great paper just a couple of nitpicks in the paper that might make it a little clearer.
1.
To use it you have to provide a set of contigs resulting of a de novo transcriptome assembly…
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Hi @lilyclements,
I have a few comments on the paper that need to be addressed before we proceed to the next stage:
1. Lines 52-53 duplicate the content from lines 49-51. I recommend removing li…
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https://particletracking.readthedocs.io/en/latest/ParticleDetection/ParticleDetection.html#model-training
"of particles as model" -> "of particles a model" ?
Refers to https://github.com/openjou…
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"registered command" here https://particletracking.readthedocs.io/en/latest/RodTracker/RodTracker.html#starting-the-rodtracker is usually termed "entry point", which was confusing for me. Please advis…
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Documentation contains plenty `TBD`, is this intended?
https://github.com/ANP-Granular/ParticleTracking/blob/f06fa4b2e4da78d1b8e20e8417db8fb7910fb34d/RodTracker/src/RodTracker/backend/file_location…
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Since AGNI is now in a good state, and the documentation is quite fleshed-out, it would be quite easy to draft a JOSS paper. It would be nice to get a paper out of the model itself.
https://joss.re…
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We aim at publishing the PROTEUS software in JOSS. This should happen once we incorporate Aragog and publish at least a first release of PROTEUS as a python package.
The paper consists in a short m…
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Still waiting for Kiran to confirm tick [status](https://github.com/openjournals/joss-reviews/issues/6925#issuecomment-2231778546) but as it stands (this issue be updated)
**Functionality**
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This is for the [JOSS Review](https://github.com/openjournals/joss-reviews/issues/6768).
I'm running the GUI and while I'm running it, I'm getting errors.
```bash
A module that was compiled …
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Hi! I will be conducting my JOSS review in this issue.
epyt-flow is a really interesting and useful package that offers a large range of functions and very comprehensive documentation! The inclusio…