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exact inference is fundamental. it also still has practical utility.
other keywords: belief propagation, sum product, elimination algorithm
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A clique tree is a tree over the maximal cliques where all pairs of maximal cliques satisfy the clique intersection property.
Considering the output of junction tree for this graph, the node of the…
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We are pre 1.0 so we can just change return types at will. If there is no computational cost, then we should just return a StructuredDecomposition from the junction tree code, if there is a cost, then…
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1. Clean the current implementation
2. Better algorithms for creating Junction Trees.
3. Incorporate the Factor Graph BP into the main algorithm.
Ref #1740
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Hi,
I’m currently working on the `RNA-Seq` splicing analysis and have a question about parameter used to build reference `STAR` (https://github.com/alexdobin/STAR/tree/master) using `GENCODE` genom…
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### Discussed in https://github.com/pgmpy/pgmpy/discussions/1479
Currently, there are two formats in which data can be returned from `BeliefPropagation:query` and related methods:
* a joint dis…
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Hi,
I'm curious as to why to different samples using the same GTF file have different content in the fromGTF.*.txt files. I was on the impression that this was the ensemble of alternative splicing…
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**Original article:** van Steijn V., Kleijn C.R., Kreutzer M.T., Predictive model for the size of bubbles and droplets created in microfluidic T-junctions. Lab Chip, 2010,10, 2513-2518
Full text PD…
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I'm getting an error when performing BeliefPropagation on a BayesianModel. The issue does not occur if I use VariableElimination instead.
Something even odder is that the BeliefPropagation DOES work…
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Hello
Thank you for sharing your code
I had errors when running
Traceback (most recent call last):
File "/home/osboxes/Desktop/unsignalized-junction-control/diffDemand.py", line 58, in
d…