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**Describe the Bug**
Hi, I'm trying to make the heatmap directly from picrust2 file. I tried to modify the sample column to sample_name or other modification, but nothing worked.
Error in `pull()`:
…
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Hi,
First of all, thanks for creating this tool. It seems very neat for crunching down picrust2 output.
I am trying to run `pathway_errorbar` function but getting the following error:
```
Er…
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Hi,
I have found this to be very interesting and played with some data. I'm wondering if I have a list of genes from DEA analysis and the KEGG Ortholog (KO) IDs from another analysis. How can I ma…
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The QotM identified [PharmGKB](https://www.pharmgkb.org/), [RaMP DB](https://rampdb.nih.gov/), [Rhea-DB](https://www.rhea-db.org/), and [KEGG Pathway DB](https://www.genome.jp/kegg/pathway.html) as po…
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It is worth exploring whether there are better alternatives to insect KEGG pathway annotation than KOBAS since when we developed the pipeline ~5 years ago.
General considerations:
- have other dat…
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It would be very useful to have annotations for KEGG subsystems and genes assigned by the ModelPolisher. This would save a lot of time and work during model curation.
To obtain genes' annotations o…
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**Describe the Bug**
Wnen I use ggpicrust2 function, it always generates the error. Any help would be greatly appreciated.
Here's my dataset including the "pred_metagenome_unstart.tsv" file and "m…
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Hello,
Thank you so much for creating this fantastic package!
I used " kegg_pathways_download" to download all kegg pathways. I am confused it says "downloaded 551 records" but in the output data…
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Hi @kozo2 @jwokaty
When trying to search a reaction in "genes" database, I get the following error. Do you know a workaround this?
`KEEGREST version: 1.45.1`
```r
temp
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Could it be used for KEGG pathway enrichment analysis of metabolites in pigs?