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Dear Prof. Zhang:
I met errors when performed GWAS using IIIVmrMLM as shown below:
`[1] "Single-environment analysis for Pheno1 begins"`
`[1] "Kinship matrix caculating"`
`Error in t(uu) %*% …
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在設置反向親屬關係的時候發現了一個小問題,譬如郭氏(趙禎妻)(Guo Shi(Wife of Zhao Zhen ))- 4216 的曾祖父是郭崇(Guo Chong)- 10535
https://input.cbdb.fas.harvard.edu/basicinformation/4216/kinship/4216-10535-48/edit
如果我們在這個頁面中錄入從郭崇到郭氏…
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您好 报错 使用最新版本docker 也是同样报错
[Mar 20 2024, 3:42 AM] 0.44.1: Pulling from wzhou88/saige.survival
[Mar 20 2024, 3:42 AM] d7bfe07ed847: Pulling fs layer
[Mar 20 2024, 3:42 AM] 9aaaba2ae596: Pulling fs la…
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Hi,
I used GAPIT few months ago and it worked perfectly, Now i ran GAPIT functions after getting new data and these errors pops out. I tried using the old data as it is, but same happens. Please H…
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Would be nice to optionally be shown the name of the kinship relations:
If same parents
If male then brother
If female then sister
If connection goes one up and the sideways uncles
…
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I have two identical runs, with the sole difference being that in the first (runCalc) I have GAPIT calculate kinship (parameters below) and in the second (runKin) I instead use the kinship matrix calc…
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There are multiple ways of improving the current version of the proband kinship calculation algorithm.
**1. Parallelization**
When we add a vertex to the cut, we need to calculate its kinship with…
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Running the following code with model selection = true gives the following errors and does not produce the BIC files. The same input files will produce output without model selection = true for the mu…
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Hi. Is there any detailed documetation about the parameters used in `Metida`? Like, if I have a kinship matrix, which commonly used in genetic studies reflects the pairwised genetic relatedness, and i…
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Should we be using a kinship matrix built on the entire SNV set?
I think we should be running LD pruning prior to generating a kinship matrix to not inflate sample relatedness.
Does the A.mat …