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**What happened**:
I scanned usr/lib using the newest syft (1.0.7)
I see that some packages are extracted without versions. I would like to know if this is the expected behavour.
**What you expecte…
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## Describe the bug :
[describe-the-bug-](#describe-the-bug-)
When we use the annotation `kubernetes.io/ingress.class: nginx-internal` other annotation are ignored.
Step to reproduce: `helm templat…
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Hi there,
I was planning to use KO annotations in HUMAnN3 to feed into omixer-rpm, but when I do this only about 4% of reads are mapping to KOs and the rest are ungrouped. I'm just wondering if thi…
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Hello,
I was wondering if the KEGG annotation produced by Trinotate consists of KO terms (K numbers) or something else? I had a look at the SQLite database created by `Build_Trinotate_Boilerplate_…
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**Describe the Bug**
Wnen I use ggpicrust2 function, it always generates the error. Any help would be greatly appreciated.
Here's my dataset including the "pred_metagenome_unstart.tsv" file and "m…
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Hi,
I have used metaerg to annotate metagenome bins, and have found some issues with the KEGG annotations.
I tested out a Methanogen MAG. It has the McrA gene and its correctly annotated in the…
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Error in `ggplot_add()`:
! Can't add `e2` to a object.
Run `rlang::last_trace()` to see where the error occurred.
> rlang::last_trace()
Error in `ggplot_add()`:
! Can't add `e2` to a object.
…
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I'm finding differences between `kos.parsed.counts.tsv` (in `results/annotation/$SAMPLE/`) and the results of my own script for summing counts annotated per KEGG KO. My script revolves around the foll…
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We should be able to specify the type of `$parent` and `$parents[X]` with a new annotation ``.
It's important for KOLint to understand what can be in `$parent`, `$parents[0]` (same as `$parent` all…
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Hello,
I've tried the command the tutorial suggests
`$ ./exec_annotation -o output.tsv input.fasta` but I when I run it on my terminal, I get the message "Error: KO list not given"
I've also t…