NBISweden nbis-meta issues

NBISweden / nbis-meta

A snakemake workflow for metagenomic projects

https://nbis-metagenomic-workflow.readthedocs.io/

MIT License

14 stars 9 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Differences between `kos.parsed.counts.tsv` files and my own script for summing counts per KEGG KO

#36 Dries-B opened 9 months ago
1
Parameters for featureCounts

#35 Dries-B opened 10 months ago
4
Error in rule plot_assembly_stats

#34 s-junguy opened 1 year ago
0
No rule to produce --use-conda

#33 s-junguy closed 1 year ago
0
How can I continue ?

#32 luozhy88 opened 1 year ago
0
Could `units` in `samples.tsv` accept strings instead of only integers?

#31 Dries-B closed 1 year ago
1
Errors in rule edger_normalize_features

#30 Dries-B closed 1 year ago
5
Split

#29 johnne closed 2 years ago
0
Mapping

#28 johnne closed 2 years ago
0
Migrate wiki to read-the-docs

#27 johnne closed 2 years ago
1
Add choice to map all samples to all assemblies or not

#26 Dries-B opened 2 years ago
2
Creating an nbis-meta environment for HPC

#25 lisalenorelowe closed 1 year ago
4
Develop

#24 johnne closed 3 years ago
0
Develop

#23 johnne closed 3 years ago
0
v2.3

#22 johnne closed 3 years ago
0
2.2-patch1

#21 johnne closed 3 years ago
0
Develop for v2.2

#20 johnne closed 4 years ago
0
Add normalization functionality

#19 johnne closed 4 years ago
0
Develop

#18 johnne closed 4 years ago
0
Develop

#17 johnne closed 4 years ago
0
Add fastANI

#16 johnne closed 4 years ago
0
bugfix

#15 johnne closed 4 years ago
0
Develop

#14 johnne closed 4 years ago
0
Add slurm profile

#13 johnne closed 4 years ago
0
Slurm

#12 johnne closed 4 years ago
0
Fix old key reference in kraken config

#11 johnne closed 4 years ago
0
Restructure workflow

#10 johnne closed 4 years ago
0
Config

#9 johnne closed 4 years ago
0
Bestpractice

#8 johnne closed 4 years ago
0
Feature/metaphlan3

#7 johnne closed 4 years ago
0
Develop

#6 johnne closed 4 years ago
0
Add Clark

#5 johnne opened 4 years ago
0
Env

#4 johnne closed 4 years ago
0
Add prebuilt indices

#3 johnne opened 4 years ago
0
Add recentrifuge

#2 johnne opened 4 years ago
0
Minor proposals precisely on paragraph 53 & 54

#1 kant closed 4 years ago
0