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I was testing out some simulations with GPUMD and I noticed that the when using the `tri` option in the [`npt_mttk` ensemble](https://gpumd.org/dev/gpumd/input_parameters/ensemble_mttk.html#kw-ensembl…
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Use the wordcloud python library to generate a word cloud from this (source: Modified from I2K Program):
```
BioImage-Analysis Code Generation
Introduction to CellProfiler: A beginner’s guide to …
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### 1. Description of your software, organization, company or team
SpotMAX is a Python software for the analysis of multi-dimensional fluorescence microscopy data.
- Preprint: https://www.biorx…
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**What type of problem are you experiencing and which function is you problem related too**
I am running cisTopic on a very large dataset (200k cells) and it takes apparently very long. It has approx…
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For a better preview, we could separate each part of the text with code blocks.
for example in https://github.com/usegalaxy-eu/galaxy-social/pull/122 it could be something like this:
👋 Hello! I'm …
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- Here's the summary of consulting a LLM specialist:
---
- We have an initial thought in #74 as follows:
![image](https://github.com/user-attachments/assets/265a3d7d-0454-4e7b-9c99-a0dd9f9ecf7c…
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Hi,
I noticed that in your implementation of Tangram, you use the following code for training epochs:
` ad_map = tg.map_cells_to_space(adata_sc,adata_st,
mode="…
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`---------------------------------------------------------------------------
NotImplementedError Traceback (most recent call last)
Cell In[15], [line 2](vscode-notebook-cell:?e…
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scEmbed is an excellent job that provides an dimensionality reduction encoding for scATAC-seq data. When I tried to use it to map my data, I found that it took an extremely long time to run model.enco…
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Currently the slope triad computations (the critical ingredient of the redi parameterization) are defined to do horizontal gradients in model index space, see here
https://github.com/E3SM-Project/E…