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I'm using the glca package to estimate a latent class model with covariates. In the table of covariate coefficients, the reference value for the regiao variable is set to CENTRO-OESTE, but I would lik…
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Hi,
I'm currently looking to use scVAEIT to integrate two different datasets, CITE-seq (containing scRNA-seq and protein abundance) and scMultiome (containing scRNA-seq and scATAC-seq). They have …
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Is it possible to control for covariates/latent variables (categorical and continuous variables) during DE?
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CustomDataloaders currently don't support advanced capabilities like scArches or celltype prediction in scANVI. We have to create a registry without setup_anndata that contains the same elements (see …
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I am able to run the `factor` command with no covariates. However, when I include covariates I get this output
```
Using 8 threads.
1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23 pre…
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Hello,
I am running into an error with the apex factor function. Below is my command and the output. These .bed and cov files can be successfully used to run apex lmm and cis, so I am confident in…
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Is there any utility to adding `type` and `cov.std` options to `mxStandardizeRAM`?
FYI , in lavaan,
`type` for continuous variables
* "std.lv" var of latents only
* "std.all" = var of both man…
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I am using treeArches to train a tree for a single-tissue (thymus) subset of the Tabula Sapiens dataset (https://tabula-sapiens-portal.ds.czbiohub.org/).
I followed the training steps listed [here…
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Hi David,
I'm testing suez and I've created the covariance matrix using the condition and latent variables.
Is there a way to add known covariates? (e.g. genotype PCs, Sex, etc) and interaction …
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I'm reorganizing some of my code that runs an MSOM in either JAGS or Stan.
I decided that it would be a good idea to go ahead and determine the names of all the parameters/ 'latent values' (I'm not s…
rBatt updated
8 years ago