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rBatt
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trawl
Analysis of scientific trawl surveys of bottom-dwelling marine organisms
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version 0.5.0
#117
rBatt
closed
7 years ago
0
Development (start of 0.4.0)
#116
rBatt
closed
8 years ago
1
Merge pull request #111 from rBatt/development
#115
rBatt
closed
8 years ago
0
Stan MSOM Processing Outdated
#114
rBatt
opened
8 years ago
0
In maps of annual bottom temperature, distinguish between unsampled and NA
#113
rBatt
opened
8 years ago
0
Colonizations immediately followed by extinction count only as extinction
#112
rBatt
closed
8 years ago
0
Version 0.3.0
#111
rBatt
closed
8 years ago
0
make sure richness posterior properly calculated (esp for Stan)
#110
rBatt
opened
8 years ago
0
Do I need Psi and Theta to be stored by Stan/ JAGS? Or *can* I?!
#109
rBatt
opened
8 years ago
8
Rewrite multiyear Stan models in JAGS
#108
rBatt
closed
8 years ago
5
Write document with msom equations
#107
rBatt
opened
8 years ago
0
Development
#106
rBatt
closed
8 years ago
0
undo msomStatic testing changes
#105
rBatt
closed
8 years ago
1
put soda, hadisst and etopo data read files back, and in trawlData
#104
rBatt
closed
8 years ago
1
Is the model right? Verification, not validation
#103
rBatt
closed
8 years ago
13
Generated quantities in Stan model
#102
rBatt
closed
8 years ago
2
Omega loves 1?
#101
rBatt
closed
8 years ago
18
is K a replicate? "Closure" issue?
#100
rBatt
closed
8 years ago
11
Improve Stan MSOM Efficiency
#99
rBatt
closed
8 years ago
16
ryan screwed up, then fixed
#98
rBatt
closed
8 years ago
1
Merge ebs trawl and msom; calculate colonization/ extinction
#97
rBatt
closed
8 years ago
0
download correct side of world
#96
rBatt
closed
8 years ago
1
added EBS detectability
#95
bselden
closed
8 years ago
0
bad pdf report
#94
rBatt
closed
8 years ago
1
Comments on assess.sim.basic.pdf
#93
mpinsky
opened
8 years ago
8
Poor structure of `psi` equation in MSOM??
#92
rBatt
closed
8 years ago
11
Package for simulating species distributions
#91
rBatt
closed
8 years ago
1
Careful: Order of operations, logit/ plogis, and psi/ p
#90
rBatt
closed
8 years ago
0
simplify MSOM for p
#89
rBatt
closed
8 years ago
0
Update assess.sim.basic for now output formatting
#88
rBatt
closed
8 years ago
0
Set class `spp` attributes to mirror MSOM output
#87
rBatt
closed
8 years ago
3
Reduce data augmentation?
#86
rBatt
closed
8 years ago
5
Increase strata, reduce replicates (K)
#85
rBatt
closed
8 years ago
1
Do substrata vary in effort?
#84
rBatt
closed
8 years ago
4
Implement dynamic MSOM
#83
rBatt
opened
8 years ago
26
fix simulated space-time gradient
#82
rBatt
closed
8 years ago
0
Sim Obs Error: vary number of substrata sampled
#81
rBatt
closed
8 years ago
0
Sim Obs Error: Abrupt shift in detectability
#80
rBatt
closed
8 years ago
0
Sim Obs Error: Baseline detectability
#79
rBatt
closed
8 years ago
1
Add substrata to simulation
#78
rBatt
closed
8 years ago
1
master into sim
#77
rBatt
closed
9 years ago
0
updating ryan based on master
#76
rBatt
closed
9 years ago
0
Ryan to master; trophic trawl update
#75
rBatt
closed
9 years ago
0
Merge sim into master after basic process
#74
rBatt
closed
9 years ago
0
stop using taxize in combine.trawl by default
#73
rBatt
closed
8 years ago
0
Fix `taxLvl` in `trawl2`
#72
rBatt
closed
8 years ago
1
re-running combine.trawl; resave of tax info
#71
rBatt
closed
9 years ago
0
comment out example of mapping for Jim
#70
rBatt
closed
9 years ago
0
update path and to trawl2 for plotSpaceTime
#69
rBatt
closed
9 years ago
0
delete meta data
#68
rBatt
closed
9 years ago
0
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