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Hello,
Thanks for this great software package. It has been extremely easy to use and performs great.
For my specific application (light sheet microscopy), I deduced that it may be beneficial to …
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Some more ideas how we can contribute to smart microscopy by enhancing the Virtual Microscope Manager
## Modalities
- Light-sheet
- general 3D stuff
## More ideas
- Different Noise models
-…
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I'm not certain how to store light-sheet / light field / DIFF microscopy or even widefield, etc data in NWB. `TwoPhotonSeries` is perfectly reasonable, and uses an `imaging_plane`. `ImageSeries` does …
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WHILE the search should also be performed in synonyms for now it is not (see LSFM) ,
expected behavior: search LSFM return only one entry mentionning in the description LSFM, while it should return…
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Revise cheat sheet content:
- [ ] [biobanks.md](https://github.com/elixir-oslo/biomeddata/blob/main/pages/cheat_sheets/biobanks.md)
- [ ] [biodiversity.md](https://github.com/elixir-oslo/biomeddat…
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Hi all, first, thanks for starting this project - we are considering NGFF / Zarr 3.0 for large 3D multichannel datasets of light-sheet microscopy brain data.
I'm wondering if there is any plan to c…
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Hello, I am attempting to run Pairwise Stitching on an SGE cluster.
I realize that the code is untested (at least according to the online tutorial) but I have it working well on our cluster with the …
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Light sheet microscopy often generates 4D datasets, where a single timepoint is a volume. It would be awesome if flika could support these datasets (and potentially 5-dimensional data, e.g. [time, tri…
d-v-b updated
8 months ago
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Make Poster for ELMI 2024
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I've followed the installing instructions from your site, I removed old pluggins and .jars and installed your ONE platform (FIJI version v1.54k). Everything looks normal and when I tried to apply the …