JaneliaSciComp BigStitcher-Spark issues

JaneliaSciComp / BigStitcher-Spark

Running compute-intense parts of BigStitcher distributed

BSD 2-Clause "Simplified" License

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issues

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Fused images are blank??

#34 Elsword016 opened 2 weeks ago
0
FIRST_WINS strategy for fusion

#33 tpietzsch closed 1 month ago
0
Add authentication option and some support to path-like s3 uri-s for region specification

#32 kgabor opened 1 month ago
1
Translation only solver crashes on certain datasets

#31 kgabor opened 1 month ago
0
Add brightest interestpoint filtering to match-interestpoint step in interestpointsForReg=OVERLAPPING_ONLY mode

#30 kgabor opened 2 months ago
0
Set default two round iterative threshold values

#29 kgabor closed 2 months ago
0
Update bigdataviewer-omezarr dependency version.

#28 kgabor closed 2 months ago
0
Update build dependency versions

#27 kgabor closed 2 months ago
1
BigStitcher spark Dependency problem

#26 salammemphis opened 2 months ago
2
Solver does not converge in a detection, matching, solving sequence

#25 kgabor closed 2 months ago
1
Change config fields to protected

#24 kgabor closed 3 months ago
0
Speed up SparkAffineFusion

#23 tpietzsch closed 3 months ago
1
Prefetch

#22 tpietzsch closed 4 months ago
0
Determine which Cells exactly we need to compute the fused block, and prefetch every cell in a separate thread

#21 tpietzsch closed 4 months ago
0
using bigstitcher with slurm

#20 ededits opened 5 months ago
6
Using the same parameters to process multi-channel data

#19 s12754 opened 8 months ago
0
Can BigStitcher-Spark do fusion on a downsampled resolution (s1)?

#18 FangmingXie opened 10 months ago
3
Upgrade to Spark-3.3.2.

#17 kgabor closed 8 months ago
2
Which file formats are supported?

#16 constantinpape opened 11 months ago
0
Upgrade bdv and imglib dependencies while keeping scijava and spark version.

#15 kgabor closed 11 months ago
6
Dependencies need version updates in BigStitcher-Spark

#14 kgabor opened 1 year ago
0
Add section about building the executable to README

#13 VolkerH closed 11 months ago
0
Add an install4j badge

#12 mkitti closed 11 months ago
0
NoSuchMethodError for Gson library

#11 trautmane closed 1 year ago
2
Add storage option and use N5ZarrWriter.

#10 kgabor closed 1 year ago
2
Please support OME-NGFF Zarr

#9 StephanPreibisch opened 2 years ago
1
Error Could not initialize class ch.systemsx.cisd.hdf5.CharacterEncoding on AffineExport on h5 file

#8 boazmohar closed 2 years ago
14
Output in a way that BigStitcher can open the fused data

#7 StephanPreibisch opened 2 years ago
2
Preserve original data anisotropy?

#6 dpshepherd opened 2 years ago
29
Fusion fails on local Spark instance

#5 dpshepherd closed 2 years ago
18
OutOfMemoryError caused by creation of too many N5ImageLoader fetcher threads

#4 trautmane closed 2 years ago
10
Build failure issue on local server

#3 dpshepherd closed 2 years ago
3
could not find XmlIoBasicImgLoader implementation for format bdv.n5

#2 boazmohar closed 2 years ago
29
computational complexity of big sticher fusion shows undesirable scaling behaviour with number of tiles

#1 VolkerH closed 11 months ago
3