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JaneliaSciComp
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BigStitcher-Spark
Running compute-intense parts of BigStitcher distributed
BSD 2-Clause "Simplified" License
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Zarr Export Dependency Error
#38
AdvancedImagingUTSW
opened
1 month ago
0
use version 1.3.5 of n5-zarr
#37
d-v-b
closed
3 months ago
0
Solver hangs indefinitely after global optimization and fails to create view transformations
#36
winnubstj
opened
3 months ago
0
Issues stitching .h5 dataset using SGE
#35
vbrow29
opened
4 months ago
1
Fused images are blank??
#34
Elsword016
opened
5 months ago
0
FIRST_WINS strategy for fusion
#33
tpietzsch
closed
5 months ago
0
Add authentication option and some support to path-like s3 uri-s for region specification
#32
kgabor
opened
6 months ago
1
Translation only solver crashes on certain datasets
#31
kgabor
opened
6 months ago
0
Add brightest interestpoint filtering to match-interestpoint step in interestpointsForReg=OVERLAPPING_ONLY mode
#30
kgabor
opened
7 months ago
0
Set default two round iterative threshold values
#29
kgabor
closed
6 months ago
0
Update bigdataviewer-omezarr dependency version.
#28
kgabor
closed
6 months ago
0
Update build dependency versions
#27
kgabor
closed
7 months ago
1
BigStitcher spark Dependency problem
#26
salammemphis
opened
7 months ago
2
Solver does not converge in a detection, matching, solving sequence
#25
kgabor
closed
7 months ago
1
Change config fields to protected
#24
kgabor
closed
7 months ago
0
Speed up SparkAffineFusion
#23
tpietzsch
closed
8 months ago
1
Prefetch
#22
tpietzsch
closed
8 months ago
0
Determine which Cells exactly we need to compute the fused block, and prefetch every cell in a separate thread
#21
tpietzsch
closed
8 months ago
0
using bigstitcher with slurm
#20
ededits
opened
10 months ago
6
Using the same parameters to process multi-channel data
#19
s12754
opened
1 year ago
0
Can BigStitcher-Spark do fusion on a downsampled resolution (s1)?
#18
FangmingXie
opened
1 year ago
3
Upgrade to Spark-3.3.2.
#17
kgabor
closed
1 year ago
2
Which file formats are supported?
#16
constantinpape
opened
1 year ago
0
Upgrade bdv and imglib dependencies while keeping scijava and spark version.
#15
kgabor
closed
1 year ago
6
Dependencies need version updates in BigStitcher-Spark
#14
kgabor
opened
1 year ago
0
Add section about building the executable to README
#13
VolkerH
closed
1 year ago
0
Add an install4j badge
#12
mkitti
closed
1 year ago
0
NoSuchMethodError for Gson library
#11
trautmane
closed
2 years ago
2
Add storage option and use N5ZarrWriter.
#10
kgabor
closed
2 years ago
2
Please support OME-NGFF Zarr
#9
StephanPreibisch
opened
2 years ago
1
Error Could not initialize class ch.systemsx.cisd.hdf5.CharacterEncoding on AffineExport on h5 file
#8
boazmohar
closed
2 years ago
14
Output in a way that BigStitcher can open the fused data
#7
StephanPreibisch
opened
2 years ago
2
Preserve original data anisotropy?
#6
dpshepherd
opened
2 years ago
29
Fusion fails on local Spark instance
#5
dpshepherd
closed
2 years ago
18
OutOfMemoryError caused by creation of too many N5ImageLoader fetcher threads
#4
trautmane
closed
2 years ago
10
Build failure issue on local server
#3
dpshepherd
closed
2 years ago
3
could not find XmlIoBasicImgLoader implementation for format bdv.n5
#2
boazmohar
closed
2 years ago
29
computational complexity of big sticher fusion shows undesirable scaling behaviour with number of tiles
#1
VolkerH
closed
1 year ago
3