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Make example data that models the Hawkes_neg.ref file is a mass charge ration calibration file used during workflow execution.
If everyone agrees with this modeling we will need an issues ticket …
aclum updated
3 hours ago
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Thanks to the team for the excellent tool for the community, especially for IMS data. We've recently encountered an issue with the files from an IMS-QTOF instrument. It seems to suggest that the *.d i…
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Not required before the rollout but at some point we should break down AnalyteCategoryEnum into enumerations specific to subcategories. At present it would be valid to have analyte_category populated…
aclum updated
3 weeks ago
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There should only be so many peaks expected within a certain mass range (ie 50 dalton range should only have a max of two peaks, one from each terminus).
Additionally, high mass peaks tend to be good…
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https://github.com/smith-chem-wisc/mzLib/blob/b0f82ea7bf47321ad2b81833961bff6d5706fe13/mzLib/MassSpectrometry/MzSpectra/MzSpectrum.cs#L718-L730
The linked method has an error commonly associated wi…
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Each object should have some sort of metadata that explains the fields in each object. One example: "accession" in ModificationWithLocation is a Tuple, but it's not clear unless looking at the mzLib c…
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my command:
java -jar /share/liuqi/ganyuli/proteome/software/PDV-1.7.4/PDV-1.7.4.jar \
-r combined \
-rt 5 \
-s . \
-st 1 \
-i tab2.txt \
-k s \
-o output \
-a 0.5 \
-c 5 \
-pw 1 \
-fw 800…
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Dear developers
Thank you for providing this useful tool.
I setup DeepRescore in AWS(CentOS7) with GPU backend and it could run on test data successfully.
Now, I tried on my own data but encoun…
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As part of the Berekeley refactoring, the new MassSpectrometry class will require a migration from `DataGeneration`/`OmicsProcessing` to `MassSpectrometry`. This will require both a migration and an i…
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- [x] #749
_must be closed before we can start on this_
- [x] Add ChromatographyConfiguration ids to all applicable MassSpec instances
- [x] Format change sheets to work with API endpoint sub…