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Or should the standard pattern be to specify the model in `numpyro` but pass it off to `bayeux` or `blackjax` etc for inference?
@CDCgov/pyrenew-devs
See also #361 #151
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When running the variational inference model fits in `hfs_model.ipynb`, `hfs_anomaly_model.ipynb`, `cn_ratio_model.ipynb`, and `cn_ratio_anomaly_model.ipynb`, I get the following error (image and stac…
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`initial_point=1` gives error while `initial_point=np.array([0.1])` works fine.
Possibly related to #487 for Gibbs.
MWE to reproduce error:
```python
import cuqi
import matplotlib.pyplot as plt…
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We're currently planning to include a wrapper function, `nimbleOccu`, to provide lme4-like interface for setting up occupancy models using macros and (optionally) running MCMC.
If we try to use `ni…
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Currently, there are many situation in which we run an entire sampler in order to test AD, such as many cases in https://github.com/TuringLang/Turing.jl/blob/master/test/mcmc/abstractmcmc.jl .
This…
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If we have any hope for the hierarchical prior to be applicable in the real-world, we will need to devise a sampler that can incorporate the alphas and sample the model at the same time.
Currently we…
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### Presentation of the new sampler
Parallel tempering, known also as replica exchange MCMC, maintains $K$ Markov chains at different temperatures, ranging from $\pi_0$ (the reference distribut…
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I'm trying to use MCHMC with a *fairly* simple (?) model, but it errors with the following:
```jl
using CSV
using DataFrames
using Random, Turing
using MicroCanonicalHMC
@model function mode…
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In GitLab by @git.ligo:colm.talbot on Jun 27, 2024, 18:03
I've noticed intermittent failures of the sampler run test due to bilby_mcmc timeouts, e.g., [here](https://git.ligo.org/lscsoft/bilby/-/jobs…
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Hello,
I have completed a successful fit of 10 supernova images and am now trying to use the scene.sample() function to get a measurement for the flux of the supernova. I was basing my code off of …