CDCgov PyRenew issues - Githubissues

CDCgov / PyRenew

Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

https://cdcgov.github.io/PyRenew/

Apache License 2.0

14 stars 3 forks source link

issues

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Consider using Sphinx AutoAPI for API reference

#476 dylanhmorris opened 1 week ago
0
Create function to facilitate adding dates to time-varying elements in `InferenceData`

#475 damonbayer closed 1 month ago
1
Use `ruff format` for `qmd`s

#473 damonbayer closed 1 month ago
1
Update `quarto_python_formatter.py` to use `ruff` (and possibly find a new home for it)

#472 damonbayer closed 1 month ago
2
Remove `pad_edges_to_match`

#471 damonbayer opened 1 month ago
0
refactor infectionswithfeedback.py to allow shared infection feedback strength across sites

#470 sbidari closed 1 month ago
1
Remove redundant tutorial build

#469 dylanhmorris closed 1 month ago
3
Remove redundant pre-build of tutorials now that they are built as part of the standard sphinx build html workflow

#468 dylanhmorris closed 1 month ago
0
Remove black and isort in favor of ruff

#467 dylanhmorris closed 1 month ago
1
Should pyrenew's default MCMC sampler backend be numpyro's bundled NUTS sampler?

#466 dylanhmorris opened 1 month ago
3
Switch to ruff for formatting

#465 damonbayer closed 1 month ago
0
Remove type annotations from docstrings given that we use type hints?

#464 dylanhmorris opened 1 month ago
4
Add and configure intersphinx

#463 dylanhmorris closed 1 month ago
1
Review and clean up `developer_documentation.md`

#462 dylanhmorris opened 1 month ago
1
Add intersphinx to link to docs of key dependencies

#461 dylanhmorris closed 1 month ago
0
Use autosummary or similar instead of manually documenting modules

#460 dylanhmorris opened 2 months ago
0
Have edit links for dynamically-generated documentation pages point to their source files

#459 dylanhmorris opened 2 months ago
0
Longer running infection feedback process

#458 SamuelBrand1 opened 2 months ago
0
231 write sphinx documentation using markdown via myst

#457 dylanhmorris closed 1 month ago
4
Adding the post-page-artifact job

#456 gvegayon closed 1 month ago
11
Preview github-pages on PRs

#455 gvegayon closed 1 month ago
0
use `init_to_sample` as default `init_strategy`

#454 damonbayer closed 2 months ago
1
Require at least numpyro 0.15.3

#453 damonbayer closed 2 months ago
1
DRYify input validation

#452 dylanhmorris opened 2 months ago
1
Helper functions for broadcasting / shape checking / etc for multi-dim arrays with time as first dimension

#451 dylanhmorris opened 2 months ago
0
Depend on release version of `numpyro`

#450 dylanhmorris closed 2 months ago
0
Remove gvegayon from CODEOWNERS

#449 gvegayon closed 2 months ago
2
Document `scan` conventions in `developer_documentation.rst`

#448 dylanhmorris closed 2 months ago
1
`InfectionsWithFeedback` requires `gen_int` and `inf_feedback_pmf` to be of same length

#447 damonbayer opened 2 months ago
1
Vectorize differenced process

#446 dylanhmorris closed 2 months ago
5
multidimensional array convention

#445 sbidari closed 2 months ago
1
Tutorial / Model Demonstrating limitations of `scan` with `numpyro.plate`

#444 damonbayer opened 2 months ago
1
Document the convention that the first axis is time whenever a multi-dimensional array is a timeseries

#443 dylanhmorris closed 2 months ago
3
Vectorize `DifferencedProcess`

#442 dylanhmorris closed 2 months ago
0
Remove `SampledValue`

#441 damonbayer closed 2 months ago
1
update infectionswithfeedback process

#440 sbidari closed 2 months ago
6
Vectorize `ARProcess()`

#439 dylanhmorris closed 2 months ago
5
Remove duplicate test introduced in #437

#438 damonbayer closed 2 months ago
1
Add default observation rate to `compute_delay_ascertained_incidence`

#437 damonbayer closed 2 months ago
1
Fix text in readme

#436 damonbayer closed 2 months ago
1
Update InfectionsWithFeedback process to handle batch input within numpyro plate context

#435 sbidari closed 2 months ago
0
Parallelize quarto rendering of tutorials in CI

#434 dylanhmorris opened 2 months ago
1
Clean Up `InfectionInitializationMethod` and `InfectionInitializationProcess`

#433 damonbayer opened 2 months ago
1
Reworks `InitializeInfectionsExponentialGrowth` to work with `numpyro.plate`

#432 damonbayer closed 2 months ago
5
Further Prune PostProcessing Code, Specifically plot_posterior And spread_draws

#431 AFg6K7h4fhy2 closed 1 month ago
4
Modify README With Instantiated Model Information

#430 AFg6K7h4fhy2 closed 2 months ago
1
Edit README To Include Instantiated Models

#429 AFg6K7h4fhy2 closed 2 months ago
1
create a censored normal distribution

#428 sbidari closed 2 months ago
5
Create a CensoredNormal distribution

#427 sbidari closed 2 months ago
1
Further Prune PostProcessing Code, Specifically `plot_posterior` And `spread_draws`

#426 AFg6K7h4fhy2 closed 1 month ago
0