I suggest using the poreCov pipeline as the backend for SARS-CoV-2 wastewater lineage deconvolution from nanopore long reads. You already added `freyja` ( #274 #270), which is great as the current com…
In preparation to supporting R 3.4, we are migrating any non-bio-related packages over to the conda-forge channel. This issue aims to organize and track the progress.
Below are the results of:
`…