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The freesurfer files that I'm trying to run Hipsta on are from Freesurfer7.2 labeled: rh.hippoAmygLabels-T1.v21.CA.mgz, lh.hippoAmygLabels-T1.v21.CA.mgz
When looking at results through freeview the…
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About half the subjects had similar errors:
> data/freesurfer/sub-MP02312/mri/orig/001.mgz /scratch1/03201/jbwexler/openneuro_derivatives/derivatives/fmriprep/ds003669-fmriprep/sourcedata/f…
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Hi!
In DeepPrep documentation, it is specified that "the brain mask can be generated automatically and also be manually edited in this process."
Does it mean that we should store our own brain …
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Why is it that after I do the hippocampal subpartition segmentation in Freesurfer 6.0, the size of the hippocampus I get pieced together from the 22 subpartitions seems to be missing a portion of the …
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Hello @yetianmed,
Thank you for making this atlas available in volumetric space and in cifti format. I believe in order to extract freesurfer data, I need the surface files to be in .annot format, …
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I have followed the pipeline on https://prime-re.github.io/structural/surfaces_and_flatmaps_notebook/Surfaces_and_Flatmaps.html. It was extremely helpful, thanks.
I am trying to create the gm ribb…
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### What happened?
We are running fmriprep within docker for our own subject database (rs-fMRI, T1, T2). The laptop I'm using has M3 chip, 32GB memory, and 12 cores. Some of the subjects pass succes…
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I use mgz as part of a website that analyses uploaded games. Last successful upload was 2024-03-13 17:39:26 UTC (in case they changed something on AoE2's side). I have attached the recording file. It …
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### What happened?
Running fMRIprep with pre-computed freesurfer output using -hires and -expert options flag in recon-all makes fMRIprep crash at autorecon1 stage
### What command did you use?
```…