poldracklab tacc-openneuro issues

poldracklab / tacc-openneuro

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MRIQC: "Permission denied: '/home/mriqc/.cache'"

#86 jbwexler opened 2 weeks ago
3
ds004009-fmriprep- "error: GCAhistoScaleImageIntensities: could not find wm peak^@"

#85 jbwexler opened 3 weeks ago
0
ds002738-fmriprep: "Description: ITK ERROR: ITK only supports orthonormal direction cosines. No orthonormal definition found!"

#84 jbwexler opened 3 weeks ago
0
ds003721-fmriprep: "Only one time point!"

#83 jbwexler opened 3 weeks ago
1
ds003669-fmriprep: "ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED***"

#82 jbwexler opened 3 weeks ago
1
Need to write a script to fix minimal-mode datasets after the fact

#81 jbwexler opened 1 month ago
0
ds002169_fmriprep: "ITK ERROR: ITK only supports orthonormal direction cosines."

#80 jbwexler opened 2 months ago
1
Matplotlib errors while running MRIQC

#79 lixinqiu98 opened 3 months ago
2
ds002574-fmriprep (minimal mode): "Error occurred when preparing to run topup"

#78 jbwexler opened 9 months ago
1
ds004302-mriqc: "ValueError: Input X contains NaN"

#77 jbwexler opened 9 months ago
0
ds001555-fmriprep (minimal mode): "mritotal: Command not found."

#76 jbwexler closed 3 weeks ago
1
ds003346-mriqc: "The 'in_file' trait of a _ReadSidecarJSONInputSpec instance must be a path like object or string representing an existing file"

#75 jbwexler opened 11 months ago
0
ds004187-mriqc: "ValueError: Input X contains NaN."

#74 jbwexler opened 11 months ago
0
ds003059-mriqc: "bids.exceptions.BIDSDerivativesValidationError: Every valid BIDS-derivatives dataset must have a GeneratedBy.Name field set inside 'dataset_description.json'."

#73 jbwexler opened 1 year ago
0
ds003540-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node ICA."

#72 jbwexler opened 1 year ago
0
ds004299-fmriprep: "Exception raised while executing Node topup"

#71 jbwexler opened 1 year ago
2
ds003550-fmriprep: "IndexError: boolean index did not match indexed array along dimension 0; dimension is 39 but corresponding boolean dimension is 64"

#70 jbwexler opened 1 year ago
1
ds002837-fmriprep: ICA-AROMA issues

#69 jbwexler closed 1 year ago
4
ds003604-fmriprep: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node n4_correct."

#68 jbwexler opened 1 year ago
5
ds001497-fmriprep: "OSError: [Errno 39] Directory not empty: 'label'"

#67 jbwexler closed 1 year ago
6
ds001510-mriqc: gets stuck after "dsplots" and doesn't exit job

#66 jbwexler closed 11 months ago
1
ds002320-mriqc: "IndexError: cannot do a non-empty take from an empty axes."

#65 jbwexler opened 1 year ago
0
Note version of software run in README

#64 effigies closed 1 year ago
1
Remove --resource-monitor

#63 effigies closed 1 year ago
1
fmriprep vs23.0.0 fsaverage issues

#62 jbwexler closed 1 year ago
6
ds003604-fmriprep: "ValueError: A fieldmap or phase-difference estimation type was found, but an anatomical reference (magnitude1 file) is missing."

#61 jbwexler closed 1 year ago
5
To consider: Remove AROMA, possibly add MNI152NLin6Asym output space

#60 effigies opened 1 year ago
1
MRIQC v23.0.0: "mriqc: error: One or more participant labels were not found in the BIDS directory: s8177."

#59 jbwexler closed 1 year ago
4
ds002843-mriqc: "Can't use dataset with < 5 time points per voxel!"

#58 jbwexler closed 1 year ago
3
Add `git annex fsck` after `datalad get` to check the hash of downloaded files

#57 effigies closed 1 year ago
1
ds003777-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node outliers."

#56 jbwexler opened 1 year ago
0
ds004042-mriqc: sub-15 times out

#55 jbwexler opened 1 year ago
0
ds003688-mriqc: "ValueError: zero-size array to reduction operation minimum which has no identity"

#54 jbwexler opened 1 year ago
4
ds001218-mriqc: "nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node segmentation."

#53 jbwexler opened 1 year ago
0
ds003454-mriqc: "numpy.linalg.LinAlgError: SVD did not converge"

#52 jbwexler opened 1 year ago
7
ds003459-mriqc: "OSError: Error occurred while trying to decode JSON"

#51 jbwexler opened 1 year ago
5
ENH: Add --me-output-echos to default fmriprep command

#50 effigies closed 1 year ago
0
ds002237-mriqc: "zran_read returned error: ZRAN_READ_FAIL"

#49 jbwexler opened 1 year ago
3
ds002311-mriqc: "Exception raised while executing Node non_steady_state_detector"

#48 jbwexler opened 1 year ago
0
ds001105-mriqc: "the 'tissue_class_map' trait of a FASTOutputSpec instance must be a pathlike object"

#47 jbwexler opened 1 year ago
0
ds000007-mriqc: "Expected dimension is 4D and you provided a 3D image"

#46 jbwexler closed 1 year ago
1
ds004007-fmriprep: "The fsaverage link probably points to an older freesurfer version"

#45 jbwexler opened 1 year ago
5
ds003430-mriqc: "File name too long"

#44 jbwexler opened 1 year ago
2
ds002995-mriqc: "Conflicting values found for entity 'run' in filename"

#43 jbwexler opened 1 year ago
0
ds000238-mriqc: "Exception raised while executing Node motion_correct"

#42 jbwexler opened 1 year ago
2
ds004007-mriqc

#41 jbwexler opened 1 year ago
1
ds003540-mriqc: "Input data has incompatible dimensionality: Expect ed dimension is 4D and you provided a 3D image"

#40 jbwexler opened 1 year ago
5
ds002684-mriqc: "ValueError: The number of observations cannot be determined on an empty distance matrix."

#39 jbwexler opened 1 year ago
6
ds003500-fmriprep: sub-229 hung indefinitely at resume recon-all

#38 jbwexler closed 1 year ago
4
ds002422: Exception raised while executing Node ICA

#37 jbwexler opened 1 year ago
2