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Build a graph for show the target information about the miRNA.
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For Open Targets, RNAcentral could provide bibliography, entry descriptions, cross-references, and, in future, secondary structure visualisations (currently Open Targets only looks for this kind of in…
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[Franzi]
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When I try the following code
library(GDCRNATools)
library(limma)
data(lncTarget)
data("pcTarget")
data("DEGAll")
data("mirCounts")
data("rnaCounts")
###### Normalization of RNAseq data ##…
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Hi Atul,
Thank you for developing this tool.
I have been using sPARTA to identify miRNA targets in both genic and intergenic regions using two PARE libraries from bread wheat. While I successful…
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Hi,
I am trying to derive predicted targets for specific miRNAs. When looking at the targetScan results derived from the multiMir tools in comparision to the one derived from the targetScan websit…
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Hello!
my name is Natasha and I am following the tutorial on http://bioconductor.org/packages/devel/bioc/vignettes/GDCRNATools/inst/doc/GDCRNATools.html#cernas-network-analysis-of-degs
I have 2…
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I've tried to this program but somehow didn't get any results, to troubleshoot, I've used miRNAs from literature that should have worked (i.e. miR173) for Arabidopsis. Note that I downloaded the trans…
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Hi Lorena,
I wanted to know about this function 'isoNetwork'.
There are 'mirna_rse' and 'gene_rse' needed for this function but I could not get enough idea of these by the details given in doc. A…
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Hi there,
Thank you very much for this useful R package.
I am trying to use scanMiR to identify mRNA targets when using isomiRs.
I can use findSeedMatches given any miRNA sequence, either canon…