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Shall we consider adding mobile element insertions as independent variant type in MainVcfQc?
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When using same_type=1 all "INV" records (and other SO types) are skipped on the following line:
```
next if $olap_sv->class_SO_term() ne $svf->class_SO_term() && $self->{same_type} ==1;
…
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Dear Prof. Barrick,
I regularly use breseq, finding it to be very powerful and valuable tool for my research.
I recently used gdtools PHYLOGENY to get the phylogenetic tree for my clonal samples…
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VCF downloaded here http://www.completegenomics.com/public-data/69-Genomes/ causes a parse error when running vcf2wt.
The error can be isolated to a single line vcf as follows:
```
##fileformat=VCFv…
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Is it possible to provide the functionality to limit the underlying file size (automatically remove oldest element if the file reaches a certain size and new elements are coming)?
If there's no int…
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Dear Hannes
Thank you so much for developing such a nice program.
I used GraphTyper on Manta and CNVnator outputs (after getting the union of SVs by svimmer) successfully. However, when running …
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Is there a way to set the maximum number of levels?
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Have you thought about this?
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Issue #3118 was unfortunately not corrected by #3093, so I open this new issue, as suggested.
I wrote a new [index.jsx](https://github.com/ianstormtaylor/slate/files/3957896/index.txt) (renamed…
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Hey all!
I wanted to make a suggestion about adding background videos.
Since a video's file size raises significant the page's loading time, I came up with a solution where with a few lines of j…