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Ensembl
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VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
Apache License 2.0
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Missing ZYG field from VEP output
#724
IanCodes
opened
1 week ago
20
Paralogues plugin: support 'matches' annotation
#723
nuno-agostinho
opened
1 week ago
0
Adding support for ClinPred GRCh38
#722
olaaustine
closed
2 weeks ago
1
Update SpliceAI.pm
#721
SouzaBB
opened
3 weeks ago
4
Dead link in documentation
#720
dvg-p4
opened
1 month ago
1
ClinPred.pm with GRCh38?
#719
IanCodes
opened
1 month ago
1
UTRAnnotator failed to instantiate
#718
mmwheel
opened
1 month ago
2
Update G2P assembly info
#717
dglemos
closed
1 month ago
0
Fix VEP plugin docs
#716
nuno-agostinho
closed
1 month ago
0
Phenotypes: add capability to id_match and adding cols to output
#715
nakib103
closed
1 month ago
0
GeneBe plugin: automatic ACMG criteria initial
#714
pstawinski
closed
1 month ago
7
Fix RiboseqORFs plugin without FASTA file
#713
nuno-agostinho
closed
2 months ago
0
UTRanno term changes
#712
jamie-m-a
closed
2 months ago
1
Modified order to fetch chr before seq_region_name
#711
likhitha-surapaneni
closed
2 months ago
1
StructuralVariantOverlap skips all INV matches when same_type=1 used
#710
davmlaw
opened
3 months ago
1
ENSVAR-6259 - CADD plugin
#709
olaaustine
closed
1 month ago
1
CSN, GeneSplicer and MaxEntScan plugins do not use default fasta
#708
davmlaw
opened
3 months ago
2
AlphaMissense: improve JSON output
#707
nuno-agostinho
closed
3 months ago
0
Update AlphaMissense for web VEP
#706
nuno-agostinho
closed
3 months ago
0
Update AlphaMissense for web VEP
#705
nuno-agostinho
closed
3 months ago
0
AlphaMissense: update files licence to CC BY 4.0
#704
nuno-agostinho
closed
3 months ago
1
CADD plugin not working as expected in v111
#703
puva
opened
3 months ago
1
Adding denovo to visible list
#702
jamie-m-a
closed
3 months ago
2
dbNSFP plugin only producing empty columns
#701
Hepit
closed
3 months ago
4
neXtProt documentation and check
#700
olaaustine
closed
3 months ago
1
neXtProt values are empty
#699
MGCarta
closed
2 months ago
1
CADD can not get any scores
#698
zyxNo1
closed
4 months ago
6
SingleLetterAA plugin not working as expected
#697
MGCarta
closed
2 months ago
7
Fix to compute last complete codon in Downstream plugin
#696
likhitha-surapaneni
closed
3 months ago
1
Update to dbNSFP 4.7c data
#695
nuno-agostinho
closed
3 months ago
1
Using dbNSFP4.6_gene.gz as annotation source
#694
GACGAMA
opened
4 months ago
1
Add new plugin section `Gene tolerance to change`
#693
nuno-agostinho
closed
3 months ago
1
SpliceAI scores
#692
jml96
closed
2 months ago
8
Handling deletion in alt protein sequence
#691
likhitha-surapaneni
closed
4 months ago
2
Update RiboSeqORFs
#690
nuno-agostinho
closed
4 months ago
0
GeneSplicer: improve argument processing
#689
nuno-agostinho
closed
4 months ago
2
Update to dbNSFP 4.5c
#688
nuno-agostinho
closed
4 months ago
1
2024 Copyright update
#687
jamie-m-a
closed
5 months ago
1
Improve and optimise GWAS plugin
#686
nakib103
closed
3 months ago
1
GWAS Plugin Initialization
#685
Bobsimonoff
closed
3 months ago
3
GWAS plug in Assumptions related to SNPS column
#684
Bobsimonoff
closed
3 months ago
3
CADD - more prevention of SV annotation with snv/indels annotation file
#683
nakib103
closed
5 months ago
2
Fix del / ins error. Add MAX option
#682
jamie-m-a
closed
3 months ago
2
Improve Paralogues plugin
#681
nuno-agostinho
closed
1 month ago
1
Fix MaveDB checks for RegulatoryFeature and MotifFeature
#680
nuno-agostinho
closed
5 months ago
1
Updating pheno orthologous
#679
olaaustine
closed
5 months ago
1
Plugin Conservation cannot annote GERP score for INDEL correctly
#678
jxcao98
closed
5 months ago
4
Fix FATHMM_MKL
#677
dglemos
closed
6 months ago
1
FATHMM-MKL: Failed to compile plugin FATHMM_MKL: Global symbol "$allele" requires explicit package name.
#676
JasperBoom
closed
6 months ago
1
Update synopsis for CADD-SV
#675
nakib103
closed
6 months ago
1
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