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Ensembl
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VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
Apache License 2.0
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Fix SpliceAI alleles match
#752
dglemos
opened
3 hours ago
0
SpliceVault support for GRCh37 ?
#751
yangyxt
opened
1 week ago
5
Allow gnomAD v4 data for LOEUF plugin
#750
nakib103
opened
2 weeks ago
0
Bugfix: CADD plugin - same score for all alt alleles
#749
nakib103
closed
2 weeks ago
0
Added functionality to use personal API key
#748
SAADAT-Abu
closed
2 weeks ago
4
CADD plugin gives the same score for different alternative alleles？
#747
Xi-Cao
closed
2 weeks ago
7
Changed logic for calculating new peptide length
#746
likhitha-surapaneni
opened
1 month ago
0
Download of dbNSFP4.5c.zip is not working from ftp
#745
MGCarta
closed
1 month ago
3
rollback utr skip
#744
jamie-m-a
closed
1 month ago
2
Fix UTR length calculation
#743
nakib103
closed
1 month ago
1
UTRAnnotator Illegal division by zero
#742
suzyhh
closed
1 month ago
5
Update G2P - PanelApp allelic requeriment
#741
dglemos
closed
2 months ago
1
Suggestion: Make `transcript_match=1` the default for the dbNSFP plugin
#740
dvg-p4
closed
1 month ago
3
Link for DisGenet Input data not working anymore
#739
pietrojulia
closed
1 month ago
1
Update dbNSFP data to 4.8c and 4.9c
#738
nuno-agostinho
closed
2 months ago
0
Failed to instantiate plugin UTRannotator
#737
hachemi23
closed
1 month ago
11
Failed to instantiate plugin AncestralAllele
#736
Mani3bigs
closed
2 months ago
3
Issue: Missing Plugin Columns in INFO Field of VCF File when Using dbNSFP with VEP
#735
poddarharsh15
closed
2 months ago
6
Conservation: fix when there is no conservation data
#734
nakib103
closed
3 months ago
1
UTRAnnotator: Variable names starting with digits
#733
wwgordon
closed
3 months ago
6
Update version in plugin_config.txt
#732
likhitha-surapaneni
closed
3 months ago
1
Conservation plugin attempts network connection in offline mode
#731
davidfstein
closed
3 months ago
9
Fix ClinPred plugin data for GRCh38
#730
nuno-agostinho
closed
3 months ago
0
REVEL plugin: set human assembly for web VEP
#729
nuno-agostinho
closed
3 months ago
0
mutfunc: Skip annotation if no sequence
#728
nakib103
closed
3 months ago
0
no results from mutfunc plugin
#727
mathob
closed
4 months ago
8
PolyPhen_SIFT plugin: add meta table to sqlite3 database
#726
nuno-agostinho
closed
3 months ago
0
FunMotifs: missing annotation
#725
robertzeibich
closed
3 days ago
10
Missing ZYG field from VEP output
#724
IanCodes
closed
1 month ago
22
Paralogues plugin: support 'matches' annotation
#723
nuno-agostinho
closed
2 months ago
1
Adding support for ClinPred GRCh38
#722
olaaustine
closed
5 months ago
1
Update SpliceAI.pm
#721
SouzaBB
opened
5 months ago
5
Dead link in documentation
#720
dvg-p4
closed
1 month ago
1
ClinPred.pm with GRCh38?
#719
IanCodes
closed
3 days ago
3
UTRAnnotator failed to instantiate
#718
mmwheel
closed
3 months ago
3
Update G2P assembly info
#717
dglemos
closed
6 months ago
0
Fix VEP plugin docs
#716
nuno-agostinho
closed
6 months ago
0
Phenotypes: add capability to id_match and adding cols to output
#715
nakib103
closed
6 months ago
0
GeneBe plugin: automatic ACMG criteria initial
#714
pstawinski
closed
6 months ago
7
Fix RiboseqORFs plugin without FASTA file
#713
nuno-agostinho
closed
7 months ago
0
UTRanno term changes
#712
jamie-m-a
closed
7 months ago
1
Modified order to fetch chr before seq_region_name
#711
likhitha-surapaneni
closed
7 months ago
1
StructuralVariantOverlap skips all INV matches when same_type=1 used
#710
davmlaw
opened
8 months ago
1
ENSVAR-6259 - CADD plugin
#709
olaaustine
closed
6 months ago
1
CSN, GeneSplicer and MaxEntScan plugins do not use default fasta
#708
davmlaw
closed
2 months ago
4
AlphaMissense: improve JSON output
#707
nuno-agostinho
closed
8 months ago
0
Update AlphaMissense for web VEP
#706
nuno-agostinho
closed
8 months ago
0
Update AlphaMissense for web VEP
#705
nuno-agostinho
closed
8 months ago
0
AlphaMissense: update files licence to CC BY 4.0
#704
nuno-agostinho
closed
8 months ago
1
CADD plugin not working as expected in v111
#703
puva
closed
2 months ago
4
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