Ensembl Variant Effect Predictor - Plugins

This repository holds plugins which are developed to extend the functionality of the Ensembl Variant Effect Predictor (VEP). See here for the core VEP code.

Usage

Please refer to the documentation in each file for details of what each plugin does and how to run it. At minimum, you will need to put the module in your ~/.vep/Plugins directory (or elsewhere on your $PERL5LIB) and then run the VEP with the argument --plugin .

Documentation

• VEP documentation has general information on installing and running VEP.
• VEP plugin documentation details how plugins are developed and used.

Contact Us

Please create a separate issue for each query.

Comments or questions can also be sent to the Ensembl Helpdesk at:

https://www.ensembl.org/Help/Contact.