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Ensembl / VEP_plugins

Plugins for the Ensembl Variant Effect Predictor (VEP)
Apache License 2.0
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Conservation: fix when there is no conservation data #734

Closed nakib103 closed 3 months ago

nakib103 commented 3 months ago

issue reported: https://github.com/Ensembl/VEP_plugins/issues/731

We should check for undef values in the parser.

Test

vep --id "1 977935 . G A" --cache /path/to/tabixconverted --fasta /path/to/Homo_sapiens.GRCh38.dna.toplevel.fa.gz --force --cache_version 112 -a GRCh38 --offline --plugin Conservation,/path/to/gerp_conservation_scores.homo_sapiens.GRCh38.bw
nakib103 commented 3 months ago

merged to main and release/113