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For zero-shot molecule editing, I am not getting the expected results as shown in the repository's notebook.
Do you have a suggestion to improve this result.
This is what I get.
```
===== fo…
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As described in the issues #454 and #459, the molecule class can be optimized and unified with the AtomGroupInBlender class.
Goals:
- [x] clean up s. #454
- [x] write `molecule` class, with ato…
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作者你好!我在使用您给出的code和checkpoint进行molecule editing,但是我使用默认参数似乎无法复现出文章里给出的结果,请问是我的哪些参数设置有问题吗?:)
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### Problem
I'm editing an Ansible project that is in a subfolder of my VS Code workspace directory
My VS Code workspace looks like this
```
├── ansible-project1
│ ├── ansible.cfg
│ ├── do…
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Improve the contribution guide with details like below. Taken from a discussion, so reword to fit as a document:
--------
So in general we try to avoid introducing some new knobs in `eos_cli_con…
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I'm interested in editing the matching properties of atoms/molecules in rdkit. To give an example,
Input compound: `[CH3:1][CH2:2][*:3]`
Goal: remove atom 3, and edit atom 2 so that it could matc…
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Hello everyone,
I did not found the documentation section for equations last time. Later I found it here:
MoBi Documentation/Model Building and Model Components/Working with Formulas
where I hav…
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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This document outlines the rationale, requirements, and proposed technical implementation of the “DB Properties” feature.
# Context and Goals
Datagrok has a concept of entities. Among other featur…
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@Yuri05 commented on [Fri Oct 23 2020](https://github.com/Open-Systems-Pharmacology/MoBi/issues/519)
If I export a simulation which contains proteins from PK-Sim to MoBi and recreate in MoBi, unneces…