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Most of the current workflow should be compatible with the references for hMPXV. However, pangolin seems to be exclusive to SARS-CoV-2.
- The URL for the iVar GFF is https://ftp.ncbi.nlm.nih.gov/ge…
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Please place an "x" in all the boxes that apply
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- [X] I have the most recent version of this package and R
- [X] I have found a bug
- [X] I have …
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**Fields:**
- sequenced by
- sequenced by contact email
- sequenced by contact address
**Picklists:** TBD or N/A
**To-Dos:**
- [x] mint new IDs
- [x] update DataHarmonizer template(s)
- [x…
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Hi,
I am sorry to open an issue for this as it may not be a real issue.
We are currently using your ValueSet as an official reference for Swiss Vaccines in our projects.
A new vaccine has bee…
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## 💥 Proposal
I want to make model that can predict MonkeyPox skin lesion disease
I am gonna make this dataset using convulutionalNeural network CNN
the dataset i am gonna use is:-https://www.kaggl…
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Follow-up to #1. Copying some useful text from the Google doc linked there:
### csv-to-ndjson / tsv-to-ndjson
No longer needed as this can be done with augur curate passthru.
We can remove th…
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(Originally flagged the obsolete `reverse` column in https://github.com/nextstrain/monkeypox/pull/207#discussion_r1349164763)
Reverse complement sequences were initially manually flagged by the `re…
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Sampson, M.M, Polk, C.M., Fairman, R.T., DeWitt, M.E., Leonard, M.K., Davidson, L., & Passaretti, C.L., (In Press). Monkeypox testing delays: The need for drastic expansion of education and testing fo…
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### Context
Following the naming pattern set in SARS-CoV-2 sequences, strain names are usually `//`. All three fields are typically available in the metadata so we can concatenate them to "build" a r…
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## Current Implementation
CWA only enables contact tracing of SARS 2.
## Suggested Enhancement
On positive Test with monkeypox patients should be able to upload their test results and warn their…