nextstrain mpox issues - Githubissues

nextstrain / mpox

Nextstrain build for mpox virus

https://nextstrain.org/mpox

MIT License

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

annotate mutations between the inferred root and the reference sequence

#296 jameshadfield opened 1 day ago
1
Shorten authors

#295 joverlee521 closed 2 days ago
1
INRB updates

#294 jameshadfield opened 3 days ago
0
[pre-commit.ci] pre-commit autoupdate

#293 pre-commit-ci[bot] opened 3 days ago
0
Use clade I reference KJ642613 for clade I build, mask correctly

#292 corneliusroemer closed 2 days ago
0
Small tweaks to Nextclade builds

#291 corneliusroemer closed 6 days ago
0
Shorten author name list

#290 corneliusroemer closed 2 days ago
4
Add new clades to phylogenetic

#289 corneliusroemer closed 1 week ago
2
Disable transmission lines again, they are too often wrong

#288 corneliusroemer closed 1 week ago
1
Add INRB-specific build pipeline

#287 jameshadfield closed 2 weeks ago
0
assign-colors scripts are largely identical

#286 jameshadfield opened 2 weeks ago
0
ingest: Automated workflow failing during fetch from NCBI

#285 joverlee521 closed 1 week ago
5
Fix Clade I build

#284 joverlee521 closed 3 weeks ago
2
phylogenetic: Clade I build failed during filter

#283 joverlee521 closed 3 weeks ago
11
Reached maximum recursion depth when building phylogenetic trees

#282 mengfeip opened 1 month ago
3
Migrate to Nextclade v3

#281 joverlee521 closed 3 weeks ago
1
Migrate to Nextclade v3

#280 joverlee521 closed 3 weeks ago
1
Update geo-fixes

#279 jameshadfield closed 1 month ago
1
Clade-I tweaks

#278 jameshadfield closed 2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#277 pre-commit-ci[bot] closed 1 week ago
0
Update nextclade workflow

#276 corneliusroemer closed 2 months ago
0
Use accession for node name but display strain

#275 jameshadfield opened 2 months ago
0
Update clade definition and coloring

#274 trvrb closed 2 months ago
0
Move hardcode filter query into configuration files

#273 huddlej opened 3 months ago
1
Add colours for clade-Ia / Ib in all-clades build

#272 jameshadfield closed 2 months ago
2
Divergent branches on the mpox build

#271 BryanTegomoh opened 3 months ago
1
Phylo update clades

#270 joverlee521 closed 3 months ago
0
Update phylogenetic/defaults/clades.tsv to include clade Ia

#269 joverlee521 closed 3 months ago
0
Adding clade I Nextclade build and other small refactorings

#268 corneliusroemer closed 3 months ago
0
Update description

#267 joverlee521 closed 3 months ago
0
Add clade I to the phylogenetic description.md

#266 joverlee521 closed 3 months ago
0
Mpox Clade I delineation?

#265 woguta opened 3 months ago
5
Check for mutations and clades before removing

#264 huddlej opened 3 months ago
0
ingest: use new augur curate commands

#263 joverlee521 closed 4 months ago
0
ingest: use new augur curate commands

#262 joverlee521 closed 4 months ago
0
Trim reuse text

#261 victorlin closed 4 months ago
0
Sync .gitattributes with pathogen-repo-guide

#260 victorlin closed 5 months ago
1
Update phylogenetic GH Action workflows

#259 joverlee521 opened 5 months ago
0
Switch CI to `pathogen-repo-ci` action [#257]

#258 genehack closed 5 months ago
2
Convert CI to "modern" `pathogen-repo-ci`

#257 genehack closed 5 months ago
0
Switch AWS credentials from a long-lived IAM user to short-lived role sessions

#256 tsibley closed 5 months ago
0
Allow addition of unreleased INRB data

#255 jameshadfield closed 3 days ago
1
Add Clade-I build

#254 jameshadfield closed 5 months ago
1
[pre-commit.ci] pre-commit autoupdate

#253 pre-commit-ci[bot] closed 2 months ago
0
[phylo] Reconnect traits to export

#252 joverlee521 closed 6 months ago
0
[phylo] traits input not passed to `augur export`

#251 joverlee521 closed 6 months ago
1
[pre-commit.ci] pre-commit autoupdate

#250 pre-commit-ci[bot] closed 6 months ago
0
ingest: Remove `inrb` source from config.yaml

#249 joverlee521 closed 6 months ago
1
Remove `inrb.ndjson` as sequences now available via NCBI

#248 corneliusroemer closed 6 months ago
0
Fix fstring format

#247 joverlee521 closed 6 months ago
1