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### Contact Details
chiwonchung98@gmail.com
### What happened?
I've been tinkering with this pipeline for a few days but I cannot get it to work. I'm fairly new to Snakemake so I'm not exactly sure…
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**Snakemake version**
7.19.1
**Describe the bug**
Snakemake linter behavior changed on run directives compare to version 7.12.0
**Logs**
```bash
(mosaicatcher_env) [tweber@se…
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### Contact Details
fawaz@hhu.de
### What happened?
I was trying to run the test pipeline, I created a new conda environment following the Usage instruction, but I am getting an `NotImplementedErro…
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Hi everyone,
I'm trying to make a PR of this program (https://github.com/weber8thomas/mosaicatcher).
I made several tentatives but I always get the same error relative to a C++ compilation. I am…
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### Contact Details
oneillkza@gmail.com
### What happened?
A bug happened!
Looks like it's trying to install BSGenome into the R library of the conda environment inside the read-only singularity…
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### What happened?
An update to tabulate causes an error with snakemake, which has been resolved in snakemake 7.15.2 (see here for more info https://github.com/snakemake/snakemake/issues/1899).…
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samtools 1.10 has a bug in merging. It should be downgraded in the conda environment.
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Hello,
Benedict here, PhD student working with Ashley in Berlin 🙂
I'm trying to run the pipeline using the Singularity image.
I have tried my best to provide the correct input/apply the rel…