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Hi,
5ttgen gives an error when I run qsiprep 0.13.0RC1 on my data. It runs for all other subjects but errors on this one.
Here is my command:
`screen docker run -ti \
-v /Users/neurouser1/D…
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## Summary
We were trying to use the `mrtrix_multishell_msmt_pyafq_tractometry` recon specification on our local computing cluster and we are getting network connection errors (see below). The comput…
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This stems from https://github.com/bids-standard/bids-specification/issues/349, which proposed supporting the MRtrix-format tsv file as an optional alternative to FSL-format bval and bvec files. For B…
tsalo updated
3 months ago
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Write Python code that runs the mrtrix CLI to produce DTI outputs on the preprocessed data (which the current code puts in BIDS format) and then organizes it into a BEP16-compliant derivative dataset.…
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Same as #3, but with CSD instead of DTI.
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Hello,
after processing my data using Freesurfer and trying the ACT-hsvs pipeline, I get the following error:
```
[Node] Error on "qsirecon_wf.sub-xxx_mrtrix_singleshell_ss3_hsvst.anat_ingress_wf…
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Worth looking into: https://mrtrix.readthedocs.io/en/latest/getting_started/image_data.html#mrtrix-image-formats
Convertible to a NIfTI-2, but doesn't seem to be entirely volumetric, so might be wo…
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This is great - I've included the example that was generated from the workflow I've been working on.
```
graph TD
dwi2response
dwi2fod
mtnormalise
tckgen
tcksift2
dwi2response --> …
kaitj updated
1 month ago
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Hello,
This app apparently seems to be failing when loading a .tck structure despite it being generated from mrtrix0.2. Here's the error log:
"Error using read_mrtrix_tracks (line 17)
../5ed561…
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building on these notes:
https://github.com/stnava/ANTs/wiki/Reconstruct-DTI-from-DWI-using-mrtrix
does anyone know how to do motion correction and subsequent dti calculation / fiber tracking ba…