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Can you release mtoolbox in english too please ?
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Hello,
I've got an error when installing samtools-1.3 with your standard install script. Perhaps consider just adding samtools install into the conda script?
Cheers,
Phil
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I am running the last MToolBox commit (MToolBox-f527c5c), but here is the error message I obtained on a sample that previously failed (with the older version);
Thank you,
v.
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[Fri Feb …
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Hi, when I run the new MToolbox, it has VCF_dict_tmp, but no sample.vcf, it showed
"File "/MToolBox-master/MToolBox/VCFoutput.py", line 38, in
VCFoutput(VCF_dict, reference=reference_sequenc…
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I got all results but .vcf file. see below error. please help.
File "/mtoolbox/1.2.1/MToolBox/mtVariantCaller.py", line 913, in VCFoutput
i._sample_indexes[sample][0].append(genotype)
Attr…
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When I run MToolBox, it always shows this error:
"bash MToolBox.sh -i config.sh
setup.sh file not found. Setting MToolBox environment sourcing conf.sh file
setting up MToolBox variables in config f…
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Hi, I've been trying to use MToolbox for a while. I have latest version and reinstaled everything at least two times.
I have tried with my own bam file, solving problem by problem until I reached a…
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When running sample data HG00119, I meet the error "No annotation.csv found." .
The following is the conf file:
#!/bin/bash
mtdb_fasta=chrM.fa
hg19_fasta=hg19RCRS.fa
mtdb=chrM
humandb=hg19RC…
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I used to analyse FASTQ files coming from the PGM system (ThermoFisher); Often, Mtoolbox failed on 1 sample at least ; and I am not able to solve the issue except when eliminating some reads from the …
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Running i get the following error
Traceback (most recent call last):
File "mtoolbox/1.0.2/MToolBox/assembleMTgenome.py", line 443, in
mut_events = mtvcf_main_analysis(mt_table, sam_file, sa…